Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1165 ATGAACCATCAACAACCTACTCAAGACCAAATCATGTTTATGTCTCAATTATTCCCAGCTAGTCAATACACCCAAGTAGTTTCTCAACAAGGGGAGAAGAAGCCAAGACGCAAGCGTAGTAGGAAGAACAAAGGTGGAGAAAGTGCTAATGAACTGAACAAAAAGAGGAAATTGAGTGAAAAACAAGTGAATATTTTGGAGCAAAATTTTGGAAATGAACACAAACTTGACTCGGAGAGGAAGGACAAGCTTGCAATGGAGCTTGGCTTAGATCCCAGACAAGTTGCTGTGTGGTTTCAGAATCGAAGAGCTCGATGGAAGAACAGGAAACTAGAAGAAGAGTACTCAAGTCTTAAAAAATTTCATGAATCCACCATGCTCGAGAAGTGTCTCTTGGAAACTGAGGTACTAAAGCTAAGAGATCAAATTTCTGAGGCTGAGAAGGAAATCCAACGCCTTAGAGAGCCAATTGAAGGAGTTCCAAATAGTAGCTCTAGTACTTCATCAATGTCACAATCCATGGAAGTGGTGGACCCACAATTTCTTGATGAATTTGGACTTAATCATGTATATGTTGATGATGTGTTTTTCATGCCGGATGCTACATATTACTTCAATGGTCAAGAATGGATTAATGTGTATATCTAA 648 0.392 MNHQQPTQDQIMFMSQLFPASQYTQVVSQQGEKKPRRKRSRKNKGGESANELNKKRKLSEKQVNILEQNFGNEHKLDSERKDKLAMELGLDPRQVAVWFQNRRARWKNRKLEEEYSSLKKFHESTMLEKCLLETEVLKLRDQISEAEKEIQRLREPIEGVPNSSSSTSSMSQSMEVVDPQFLDEFGLNHVYVDDVFFMPDATYYFNGQEWINVYI* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1165 215 Pfam Homeodomain 54 108 IPR001356 GO:0003677
Mal6g1165 215 SMART HOX_1 52 113 IPR001356 GO:0003677
Mal6g1165 215 Coils Coil 49 69 - -
Mal6g1165 215 MobiDBLite consensus disorder prediction 24 58 - -
Mal6g1165 215 Gene3D - 44 117 - -
Mal6g1165 215 ProSiteProfiles 'Homeobox' domain profile. 49 109 IPR001356 GO:0003677
Mal6g1165 215 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 8 214 IPR045224 GO:0003700
Mal6g1165 215 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE 8 214 - -
Mal6g1165 215 PRINTS Lambda-repressor HTH signature 80 89 IPR000047 GO:0003677
Mal6g1165 215 PRINTS Lambda-repressor HTH signature 89 105 IPR000047 GO:0003677
Mal6g1165 215 MobiDBLite consensus disorder prediction 44 58 - -
Mal6g1165 215 ProSitePatterns 'Homeobox' domain signature. 84 107 IPR017970 GO:0000981|GO:0006355
Mal6g1165 215 SUPERFAMILY Homeodomain-like 54 117 IPR009057 -
Mal6g1165 215 Coils Coil 136 156 - -
Mal6g1165 215 CDD homeodomain 54 110 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1165 Mal-Chr6 17797653 17799126 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g1165 1 215 Homeobox Transcription Factor Family AT2G18550 46.429 1.22e-61 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Mal6g1165 Homeodomain 1.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1165 K09338 - gmx:100810736 294.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g1165 6 17797653 17799126 Mal6g1165 6 17797653 17799126 ECH