Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1145 ATGGATTCCAAGAACAATGTGAAGAACGATGATCCTGCTGTAGAATCACCAACTTCAGTTCTAGAAGAAGAGGAAGTGGAAGTGAAATCGGAGGAAGAGGTGCTTGTGGATGATGGGTCATCGTTGGTATCGAAAACAATGGCGAAGGAGGAAGAGAAGTTGCTTAAAGCTCGTGTTAAGGAAGAGGAGGCAAAGGTTGAGGCAGCGCCGGATCTGAATGATTCACAGTTTAATAAGTTGGATGAGCTTTTGACACAAACCAAACTCTACTCGGAGTTTCTTTTGGAGAAAATGGATGATATCACAATGGCTGCGGGTGAACAAGAGAACCCGGATGAAGAAGAGAGCAAACCGGTTGCAAAAAAGAAGGGCCGTGGATCAAAAAGAAAGGCAGCTTCACAATGCAACACTAGGAAAGCCAAAAAGGCAGTTGAAGCCATGATTACAAGATCTAAAGAAAACGTGAAGACTGAAGATGTGAATTTGACCGAGGAAGAAAGAACTGAGAAAGAGCAGAAGGAGCTGATGCCTTTACTAACTGGTGGAAAATTGAAGTCTTATCAACTGAAGGGCGTAAAGTGGTTGATTTCCTTGTGGCAAAATGGGTTGAATGGGATTCTTGCTGATCAAATGGGTCTTGGGAAGACAATCCAAACGATTGGGTTTCTTTCTCATCTTAAATCGAAAGGATTGGATGGGCCATATATGATAATTGCTCCTCTATCAACCCTGTCCAATTGGATGAATGAGATTTCTAGGTTTACACCAACACTCCATGCTGTTATCTACCATGGTAACAAAAGTCAGAGAGATGAAATCAGAAGGAAACATATGCCTAGAACAGTTGGCCCAAAATTTCCCTTAGTAATAACTTCTTATGAGATTGCGATGAATGATGCTAGGAAATGTTTAAGCTCATACAGTTGGAAGTATCTTGTTGTTGATGAGGGACACAGGCTCAAAAATGCAAACTGCAAATTAGTGAGGATGTTGAAATACCTAAGGGTTGAAAATAAGCTTCTTTTGACTGGTACACCGCTCCAGAATAACTTGGCCGAGCTATGGTCACTGCTGCACTTCATCTTACCTGATATATTCTCATCTCTTGACGAATTTGAGTCATGGTTTAACCTGTCAGGAAAGTGCACTAATGGTGCAACAATGGAAGAGTTGGAAGAGAAAAGAAGAACCCAAGTAGTGGCCAAGCTTCATGCAATTCTTAGGCCATTTCTTTTACGTAGGATGAAGTCTGATGTTGAGCTAATGTTGCCACGGAAAAAAGAGATCATTATATATGCTAACATGACTGAGCATCAGAAGAACTTGCAGGATCATTTAATTAAAAAGACATTGGGGAAAGTTTTAGACAAGAAACTATCAATTGGACGTGCTCCAACGAGTCTTAATAATTTGGTTATTCAGCTTAGGAAAGTCTGTAACCATCCTGACCTCTTAGAATCAATCTTTGATGGTTCATATTTTTATCCTCCTGTGAAAGAGATAATTGAAAAATGTGGAAAATTTCAATTGCTTGACCGATTGTTGGAGCGGCTATTAGCGCGGAATCACAAGGTTCTGATCTTCAGTCAGTGGACCAAAGTGCTAGATATAATGGATTATTATTTCAGTGAAAAGGGTTTCGAAGTTTGCAGGATTGATGGTTCGGTGAAGCTGGATGATAGGAAACGCCAGATCCAGGACTTCAATGATACAACCAGCAATTTCAGAATCTTTCTTGTTTCCACAAGGGCTGGTGGATTGGGAATAAACCTCACTGCAGCTGACACTTGCATTCTTTATGACAGTGACTGGAATCCTCAAATGGATTTACAGGCCATGGATAGATGTCATAGAATCGGTCAAACAAAGCCTGTTCATGTTTACAGGCTCGCTACTGCACAATCAGTAGAGGGTCGGATGTTGAAAAGAGCTTTCAGCAAGTTGAAGCTTGAGCATGTGGTGATAGAGAAAGGACAATTTCATCAAGAGCATACAAAGCCTTCCATAATGGATGAAATGGAGGAAGAGGATGTTTTGGCATTGCTTCAAGATGAAGAAACAGCTGAGGACAAAATGATACAGAAAGATATTAGTGATGAAGACCTGGAGAAGCTCTTGGATCGCAGTGATCTTATCAATAGCTCAACTGATGATAAAACTCCAGTTAGTACCTTTCCTCTTGAAGGGCCTGGATGGGAAGTGGTGATTCCAACTGCATCTGGGGGCATGCTTTCCACTCTAAACAGCTAA 2250 0.4111 MDSKNNVKNDDPAVESPTSVLEEEEVEVKSEEEVLVDDGSSLVSKTMAKEEEKLLKARVKEEEAKVEAAPDLNDSQFNKLDELLTQTKLYSEFLLEKMDDITMAAGEQENPDEEESKPVAKKKGRGSKRKAASQCNTRKAKKAVEAMITRSKENVKTEDVNLTEEERTEKEQKELMPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHLKSKGLDGPYMIIAPLSTLSNWMNEISRFTPTLHAVIYHGNKSQRDEIRRKHMPRTVGPKFPLVITSYEIAMNDARKCLSSYSWKYLVVDEGHRLKNANCKLVRMLKYLRVENKLLLTGTPLQNNLAELWSLLHFILPDIFSSLDEFESWFNLSGKCTNGATMEELEEKRRTQVVAKLHAILRPFLLRRMKSDVELMLPRKKEIIIYANMTEHQKNLQDHLIKKTLGKVLDKKLSIGRAPTSLNNLVIQLRKVCNHPDLLESIFDGSYFYPPVKEIIEKCGKFQLLDRLLERLLARNHKVLIFSQWTKVLDIMDYYFSEKGFEVCRIDGSVKLDDRKRQIQDFNDTTSNFRIFLVSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRMLKRAFSKLKLEHVVIEKGQFHQEHTKPSIMDEMEEEDVLALLQDEETAEDKMIQKDISDEDLEKLLDRSDLINSSTDDKTPVSTFPLEGPGWEVVIPTASGGMLSTLNS* 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1145 749 SMART helicmild6 536 620 IPR001650 -
Mal6g1145 749 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 196 364 IPR014001 -
Mal6g1145 749 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 510 673 IPR001650 -
Mal6g1145 749 MobiDBLite consensus disorder prediction 17 32 - -
Mal6g1145 749 MobiDBLite consensus disorder prediction 1 43 - -
Mal6g1145 749 SMART ultradead3 180 375 IPR014001 -
Mal6g1145 749 CDD SF2_C_SNF 496 630 - -
Mal6g1145 749 Pfam Helicase conserved C-terminal domain 509 620 IPR001650 -
Mal6g1145 749 Gene3D - 420 722 IPR027417 -
Mal6g1145 749 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 416 714 IPR027417 -
Mal6g1145 749 PANTHER BNAC07G16550D PROTEIN 9 748 - -
Mal6g1145 749 Pfam SNF2-related domain 187 484 IPR000330 GO:0005524|GO:0140658
Mal6g1145 749 Gene3D - 185 415 IPR038718 -
Mal6g1145 749 MobiDBLite consensus disorder prediction 122 136 - -
Mal6g1145 749 Coils Coil 45 67 - -
Mal6g1145 749 MobiDBLite consensus disorder prediction 106 140 - -
Mal6g1145 749 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 414 IPR027417 -
Mal6g1145 749 PANTHER SNF2/RAD54 HELICASE FAMILY 9 748 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1145 Mal-Chr6 17543568 17549369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g1145 236 682 RAD5 or RAD16-like Gene Family AT5G05130 24.908 4.65e-37 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mal6g1145 SNF2_N 2.2e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1145 K19001 - gmx:100777687 1170.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g1145 6 17543568 17549369 Mal6g1145 6 17543568 17549369 ECH