Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1136 ATGATGCACCATCGTTCTTGCAATGGTTCATCTCAGGGACACGTGATGGGACACTGTTCATGTGGTATGTTTCATGGACAAAACAACTCATTCTCAATGTTATTCTCTAAACCTTATGATGAACCTGAAACATATTGTTTCACTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCTTCTTCTGTTGATTGTACTCTTTCACTTGGAACACCATCCACTCGTTTCACTGAAGATGAAGAGAAAAGAAGCCGACATGAACGTCGCTCTGTCAAAAACTTCTGTTTGGATTTGCTAACTCCTAAACAGTACAACAGTACTCAGTCTCAAACAAAGGTAACACGTGGAAGTACCAATAATAATAACTGCAACAATGATTCTCTTCTTGCTCGTAGATGTGCAAACTGTGACACTACCTCAACACCTCTTTGGAGGAATGGTCCTCGAGGCCCAAAGTCACTCTGCAATGCATGTGGGATCAGATTCAAGAAAGAAGAAAGAAGAGCAACTGCAGCCGCCGCTACACCGACAGCGGCATCCGTCGGTGTAATGGAACCTTCTCCGATGTATAGCCACCACAACAACTCATGGTACGTACACCCACAGAACCAAAAGATGCAGTGCTTCACTCCAGCAATGACTAACGAGTTCCGTTTCATGGATGACTCCGATCGTGACTCTGAAAATGGCATTCCATTTCTCTCTTGGAGACTCAATGTCACTGATAGAACAAGCCTCGTTCATGACTTTACCAGATGA 762 0.4331 MMHHRSCNGSSQGHVMGHCSCGMFHGQNNSFSMLFSKPYDEPETYCFTPSSSSSSSSSSSSSSVDCTLSLGTPSTRFTEDEEKRSRHERRSVKNFCLDLLTPKQYNSTQSQTKVTRGSTNNNNCNNDSLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRATAAAATPTAASVGVMEPSPMYSHHNNSWYVHPQNQKMQCFTPAMTNEFRFMDDSDRDSENGIPFLSWRLNVTDRTSLVHDFTR* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1136 253 CDD ZnF_GATA 133 165 IPR000679 GO:0006355|GO:0043565
Mal6g1136 253 SMART GATA_3 128 183 IPR000679 GO:0006355|GO:0043565
Mal6g1136 253 PANTHER GATA TRANSCRIPTION FACTOR 18 2 252 IPR044272 GO:0003700|GO:0009908
Mal6g1136 253 Pfam GATA zinc finger 134 168 IPR000679 GO:0006355|GO:0043565
Mal6g1136 253 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 131 173 - -
Mal6g1136 253 ProSiteProfiles GATA-type zinc finger domain profile. 128 164 IPR000679 GO:0006355|GO:0043565
Mal6g1136 253 ProSitePatterns GATA-type zinc finger domain. 134 159 IPR000679 GO:0006355|GO:0043565
Mal6g1136 253 PANTHER GATA TRANSCRIPTION FACTOR 18 2 252 - -
Mal6g1136 253 Gene3D - 130 197 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1136 Mal-Chr6 17372695 17374174 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g1136 20 253 C2C2-Gata Transcription Factor Family AT3G50870 43.986 1.09e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mal6g1136 GATA 6.2e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1136 - - gmx:100790571 314.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g1136 6 17372695 17374174 Mal6g1136 6 17372695 17374174 ECH
Mal6g1136 6 17372695 17374174 Mal5g3451 5 99530205 99531176 PCT