Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1131 ATGGAAACAAAGATGTCACCAACCACTTTAGGTTACAATAGAGATTCATCTTCTTCTTCACCAACAACTCCACCAACTCAAAATTCACACCAAAACCATAATACTAATCTTTATCCACCACCACATCTTGCACCTCCTCAAAGAACCATCACAGATCCAGATCTAACGGCTACAACAACATCAGCAACAACAACCTTAATAACACCACAACCACAACCACAACCTCAACCACAACAAACAACAAAAATATGTTACCGAGAATGTTTAAGAAACCACGCGGCAAGCATGGGAAGCCACGTGGTAGATGGATGTGGAGAATTCATGCCAAGTGGTGAAGAAGGTACCCCACAATACTTCAAATGTGCTGCTTGTGATTGTCATCGTAATTTCCATCGAAAACATGTTCAACAACATAGTATTCATCAACAACAACATGTTCCTAATTTTCATCACAACAACAATGGTCACCTTAATTTTCCAACACCATCTTCATCTCAAAGATTTTCACAACCGAATTCTGGACAAGTTGTTCCACCGTCGATGATGATGACTTTTGGATCAGTTCCAGCTGAATCATCAAGTGAAGATCTCAACATGTTTGGTGCACAATTTTCCATTCAAACGCAGCAGCAGCAGCAACAAGTTTCGAAGAAGAGGATAAGGACGAAATTCTCACAGCAACAAAAAGATAGGATGATGGAGTTTGCTGAAAAAATTGGGTGGAAGATTCAGAAACAAGATGAACAAGAAGTGCAACAGTTTTGTTCTCAAGTTGGTATCAAGAGACAGGTTTTTAAGGTTTTTATGCATAATAACAAACAAGCTATGAAGAAACAACAAATGTAA 846 0.3877 METKMSPTTLGYNRDSSSSSPTTPPTQNSHQNHNTNLYPPPHLAPPQRTITDPDLTATTTSATTTLITPQPQPQPQPQQTTKICYRECLRNHAASMGSHVVDGCGEFMPSGEEGTPQYFKCAACDCHRNFHRKHVQQHSIHQQQHVPNFHHNNNGHLNFPTPSSSQRFSQPNSGQVVPPSMMMTFGSVPAESSSEDLNMFGAQFSIQTQQQQQQVSKKRIRTKFSQQQKDRMMEFAEKIGWKIQKQDEQEVQQFCSQVGIKRQVFKVFMHNNKQAMKKQQM* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1131 281 Gene3D - 202 278 - -
Mal6g1131 281 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 217 274 IPR006455 -
Mal6g1131 281 SUPERFAMILY Homeodomain-like 211 278 IPR009057 -
Mal6g1131 281 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 27 279 - -
Mal6g1131 281 MobiDBLite consensus disorder prediction 1 38 - -
Mal6g1131 281 MobiDBLite consensus disorder prediction 1 54 - -
Mal6g1131 281 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 85 134 IPR006456 -
Mal6g1131 281 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 85 134 IPR006456 -
Mal6g1131 281 Pfam ZF-HD protein dimerisation region 83 135 IPR006456 -
Mal6g1131 281 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 27 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1131 Mal-Chr6 17271058 17271903 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g1131 67 281 ZF-HD Transcription Factor Family AT2G18350 48.869 1.55e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Mal6g1131 ZF-HD_dimer 1.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1131 - - mtr:MTR_5g020510 400.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g1131 6 17271058 17271903 Mal6g1131 6 17271058 17271903 ECH