Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1125 ATGTCGTTGAGAAGTATAGTACGAGAACTCAAGGAGATGAGGGATGGGATTGGAAATACGTCGAGGAGAGGTGTAGGAAGTAGGCATTCACAGCGTCGGGCGAAGTCGCATATTGTTCCTGATATCACTCTAACATCACTTGAACCTAATCAGCAGGGACAATGGGCAAATATACCATCTGAATTGCTTCTTGATATAATTCGGAGGGTAGAAGAAACCGAGACTTCTTGGCCTGCACGTGCTGTTGTCGTTTCTTGTGGTTCTGTTTGTAAATCATGGAGAGCCGTTACTAAAGAGATTGTCCAGACTCCCGAAGAGTGTGGAAGGTTGACTTTTCCTATTTCATTAAAGCAGCCGGGTCCTCGTGATACTCCGATACAGTGCTTCATCAGGAGGGACAGAGAAACTTCTGCATATCTATTGTACTATGGATTGGTGCCATCGGAAACTGAGACTGATAAGCTGTTATTAGCTGCCAAAAAGATAAGGAGGGCAACAGGCACAGACTTCATCATATCTTTGGTTGCAGATGATTTTTCTCGTTCCAGCAATGCGTATGTTGGAAAGCTCAGGTCTAATTTTTTGGGAACAAAGTTCACAATATATGACAGCCAACCTCCACACGGAGCTGGAGTTCAACCAAATAGCCGGTCCAGTAGGAGATTTCATTCTAGGCAGGTGTCTCCAAGAGTTCCAGCGTGTAACTATATTGTTAGCACCGTTGCATATGAGCTGAATGTTCTCCGCACGAGAGGGCCAAGAAGAATGAACTGCATCATGAACTCGATACCTGTCTCAGCTGTTCAGGAAGGAGGCAATGCTCCAACTCCTACATCTTTTCCTCAAATTACCGATGAACATTTTTGTTCTGCGCCCGTACCAGAACCAAAAGGTAAAGATCCAATCGGAGACTTGAGCAATTCAACCCTCGCAGAGATGCCAGTAGAGAGCCAAGGCCCAGTTGAGTCTCTGGTACTTAAAAACAAGTCTCCCAGATGGCATGAACAGCTGCAGTGCTGGTGCCTAAACTTCAAGGGCCGTGTTACAGTGGCTTCGGTTAAGAACTTTCAACTTGTGGCTGCTGTTGAGCCATCTCATAATGTTTCTGCTGCAGAGCAAGAAAAGGTTATCTTGCAGTTTGGAAAGATTGGAAAAGATATTTTTACAATGGATTACCGTTATCCACTCTCTGCCTTCCAAGCCTTTGCGATATGCTTGAGCAGCTTTGATACAAAACCAGCCTGTGAATGA 1251 0.45 MSLRSIVRELKEMRDGIGNTSRRGVGSRHSQRRAKSHIVPDITLTSLEPNQQGQWANIPSELLLDIIRRVEETETSWPARAVVVSCGSVCKSWRAVTKEIVQTPEECGRLTFPISLKQPGPRDTPIQCFIRRDRETSAYLLYYGLVPSETETDKLLLAAKKIRRATGTDFIISLVADDFSRSSNAYVGKLRSNFLGTKFTIYDSQPPHGAGVQPNSRSSRRFHSRQVSPRVPACNYIVSTVAYELNVLRTRGPRRMNCIMNSIPVSAVQEGGNAPTPTSFPQITDEHFCSAPVPEPKGKDPIGDLSNSTLAEMPVESQGPVESLVLKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVEPSHNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1125 416 SUPERFAMILY F-box domain 51 98 IPR036047 GO:0005515
Mal6g1125 416 MobiDBLite consensus disorder prediction 205 226 - -
Mal6g1125 416 PANTHER TUBBY-RELATED 1 416 - -
Mal6g1125 416 Pfam Tub family 116 411 IPR000007 -
Mal6g1125 416 SUPERFAMILY Tubby C-terminal domain-like 104 416 IPR025659 -
Mal6g1125 416 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 416 - -
Mal6g1125 416 Gene3D - 48 103 - -
Mal6g1125 416 Pfam F-box domain 55 102 IPR001810 GO:0005515
Mal6g1125 416 PRINTS Tubby superfamily signature 373 392 IPR000007 -
Mal6g1125 416 PRINTS Tubby superfamily signature 326 343 IPR000007 -
Mal6g1125 416 PRINTS Tubby superfamily signature 394 416 IPR000007 -
Mal6g1125 416 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Mal6g1125 416 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Mal6g1125 416 PRINTS Tubby superfamily signature 344 360 IPR000007 -
Mal6g1125 416 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Mal6g1125 416 ProSitePatterns Tub family signature 2. 401 416 IPR018066 -
Mal6g1125 416 ProSitePatterns Tub family signature 1. 344 357 IPR018066 -
Mal6g1125 416 Gene3D Tubby Protein; Chain A 113 416 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1125 Mal-Chr6 17131132 17133481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g1125 1 416 TUB Transcription Factor Family AT2G18280 62.919 0.0 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mal6g1125 Tub 1.9e-107 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1125 K19600 - gmx:100778290 709.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g1125 6 17131132 17133481 Mal6g1125 6 17131132 17133481 ECH
Mal6g1125 6 17131132 17133481 Mal5g3433 5 99153201 99154887 ECH
Mal6g1125 6 17131132 17133481 Mal5g3433 5 99153201 99154887 PCT