Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1120 ATGTGGCGATCACAGCTATTATTTCGGAAGCTAAAACCGGAAAGCGGTGTTGTTCGGCGAAGATGGATGAGCACGGTGATGAGTTTTGGCGACGGAACCCACGGAGCACTCGGCTTACCAACATCCACCGTCGGCACCGGAACACACGCACACGAACCCACACCAATCCCCTCTCTCCCTTCCGACATCCTCACCGTCCACGCCGGTCATTACCACTCTCTCGCAACCACTTCCCAAGGCCATCTTTGGGCTTGGGGTAGAAACAACGAAGCCCAACTCGGTCGTGGGTTTTCCGCTAGAGAGACATGGAATGAGCCAAGAAGAGTGGAGGGGTTGGAAAATGTGAAAGTGTGTGGTGCTTTTGCGTCTGGTGTTGTTTCGTGTGGTGTTGGTGATGATGGGTCTGTTTGGGTTTGGGGGAAGTCGAAAAGGGGTCAGCTTGGTCTTGGAAAAGATGTTACTGAAGCTGTTGTGGCTTCTAGAGTTGAAGGACTTTCTGGAGAAAATGTAGCTAAGGTCTCATTTGGTTGGGGGCACGCTCTTGCGTTAACTGTGGATGGCAAGTTGTTTGGGTGGGGCTATTATGCGGATGGGAGGATAGGGAATATGGGGAATGATCACTTGGAGTCATCTCCATTAGATTCCACTGCAAGTGCATTTTCAAACAACACACAAATCACTAGTTCAGACCTGGAAGTCGCTGAAAAGAGAGTCTTACAAGGAATGTCGGAGGAGAATAACATGCCAATAATATGGGAACCTCGCTTGGTGGAAGAACTGCGTGGCGTTCAAGTTGTGGACATTGCATGTGGCCTTGATCACTCTTTAGTTCTTTGCCGTGATGGTGCCCTCTTGAGCTGTGGAAGTAACGTGTACGGCCAATTGGGGCGAGCTAGAGAAGATTTGGGATTTTTTCCTGTTGACATAAATTTTACTCCCGTTTCTGTAGCAGCAGGGCTTGGTCATTCTTTGGCAATATGCCAGCTTGATGAATCAGATAATAGTGCAACTTTGGGGACTACAAACATTGCTTCATGGGGGTGGAACATGAGTTCTCAGCTTGGAAGGTCAGGGCCTGCAAACCTTCCTGCCTTGATTGATGCATTGACTGGGGAAAATCCTGTTTCGGTTTCAGCAGGGCGTGCGCATTCGGTTGCTCTCACGTCAAAAGGAGAAATGTGGGTCTGGGGATCTGGCAAAAATGGTAGACTTGGATTGTCAAGTTCTGTTGACGAAGATGAGCCGTTTTACCTTGATTCCTTAGAAGATTTTCAAATTTTGCAGGCTGTGTCCGGGTTTGATCATAATCTTGTTCTAGTTGCTGGCTGA 1329 0.4861 MWRSQLLFRKLKPESGVVRRRWMSTVMSFGDGTHGALGLPTSTVGTGTHAHEPTPIPSLPSDILTVHAGHYHSLATTSQGHLWAWGRNNEAQLGRGFSARETWNEPRRVEGLENVKVCGAFASGVVSCGVGDDGSVWVWGKSKRGQLGLGKDVTEAVVASRVEGLSGENVAKVSFGWGHALALTVDGKLFGWGYYADGRIGNMGNDHLESSPLDSTASAFSNNTQITSSDLEVAEKRVLQGMSEENNMPIIWEPRLVEELRGVQVVDIACGLDHSLVLCRDGALLSCGSNVYGQLGRAREDLGFFPVDINFTPVSVAAGLGHSLAICQLDESDNSATLGTTNIASWGWNMSSQLGRSGPANLPALIDALTGENPVSVSAGRAHSVALTSKGEMWVWGSGKNGRLGLSSSVDEDEPFYLDSLEDFQILQAVSGFDHNLVLVAG* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1120 442 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 187 281 IPR000408 -
Mal6g1120 442 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 268 278 IPR000408 -
Mal6g1120 442 Pfam Regulator of chromosome condensation (RCC1) repeat 375 402 - -
Mal6g1120 442 Pfam Regulator of chromosome condensation (RCC1) repeat 265 294 - -
Mal6g1120 442 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (CELL CYCLE REGULATORY PROTEIN)-RELATED 19 441 - -
Mal6g1120 442 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 24 79 IPR000408 -
Mal6g1120 442 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 80 141 IPR000408 -
Mal6g1120 442 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 282 329 IPR000408 -
Mal6g1120 442 Pfam Regulator of chromosome condensation (RCC1) repeat 80 122 IPR000408 -
Mal6g1120 442 Pfam Regulator of chromosome condensation (RCC1) repeat 28 75 IPR000408 -
Mal6g1120 442 Pfam Regulator of chromosome condensation (RCC1) repeat 133 183 IPR000408 -
Mal6g1120 442 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 341 390 IPR000408 -
Mal6g1120 442 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 134 186 IPR000408 -
Mal6g1120 442 Gene3D - 235 442 IPR009091 -
Mal6g1120 442 Gene3D - 14 234 IPR009091 -
Mal6g1120 442 PRINTS Chromosome condensation regulator RCC1 signature 82 98 IPR000408 -
Mal6g1120 442 PRINTS Chromosome condensation regulator RCC1 signature 134 150 IPR000408 -
Mal6g1120 442 PRINTS Chromosome condensation regulator RCC1 signature 189 203 IPR000408 -
Mal6g1120 442 PRINTS Chromosome condensation regulator RCC1 signature 336 357 IPR000408 -
Mal6g1120 442 PRINTS Chromosome condensation regulator RCC1 signature 25 41 IPR000408 -
Mal6g1120 442 PRINTS Chromosome condensation regulator RCC1 signature 173 189 IPR000408 -
Mal6g1120 442 PRINTS Chromosome condensation regulator RCC1 signature 63 76 IPR000408 -
Mal6g1120 442 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 391 442 IPR000408 -
Mal6g1120 442 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 19 441 - -
Mal6g1120 442 SUPERFAMILY RCC1/BLIP-II 341 439 IPR009091 -
Mal6g1120 442 SUPERFAMILY RCC1/BLIP-II 24 327 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1120 Mal-Chr6 17000959 17003147 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1120 - - mtr:MTR_5g020630 808.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4023 5 109949757 109956736 Mal6g1120 6 17000959 17003147 PCT