Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1073 ATGGGTCGTGGGAAGATAGAGATAAAGTTGATAGAGAACCCTACTAACAGGCAAGTCACATACTCAAAGAGAAGAAATGGTATATTCAAGAAAGCACATGAACTTAGTGTTCTTTGTGATGCTAAGGTTTCACTCATCATGTTCTCCAAAAATAACAAGATGCATGAATACATCACCCCTGGCCTCTCCACAAAGAAAATTATTGATCAGTATCAGAAGACTTTAGGGGATATTGATCTGTGGCGTTCTCACTATGAGAAAATGCTTGAGAACTTGAAGAAACTGAAAGATATTAACAATAAACTTAGAAGACAGATCAGGCATAGAATAGGTGAAGGTGGTATGGAATTGGATGACCTTAGCTTCCAGCAACTGCGTAGTCTTGAAGATGATATGAATTCTTCCATTGCAAAAATACGTGAAAGGAAGTTCCATGTGATCAAAACTAGGACTGATACCTGCAGGAAAAAGGTTAGAAGCTTGGAGCAGATGAATGGAAATCTCCTTCTTGAACTTGAAAAGTGTGTGATCCATCCACAATTTCTTTTCCACGATGACGGAGACGAGGAATCAGCAGTTGCATTGGCTAATGGTGCCTCCACACTCTATGCATTCTGTCAGCACCATTCTCATATGAATGTTCCACACCACCACCATGGAGGAGAAGGGTTTAAAACCGACGATTTGCGCCTTGCTTGA 699 0.4049 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYITPGLSTKKIIDQYQKTLGDIDLWRSHYEKMLENLKKLKDINNKLRRQIRHRIGEGGMELDDLSFQQLRSLEDDMNSSIAKIRERKFHVIKTRTDTCRKKVRSLEQMNGNLLLELEKCVIHPQFLFHDDGDEESAVALANGASTLYAFCQHHSHMNVPHHHHGGEGFKTDDLRLA* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1073 232 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mal6g1073 232 Coils Coil 85 105 - -
Mal6g1073 232 Pfam K-box region 83 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mal6g1073 232 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mal6g1073 232 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Mal6g1073 232 PANTHER FLORAL HOMEOTIC PROTEIN DEFICIENS ISOFORM X1 1 232 - -
Mal6g1073 232 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal6g1073 232 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Mal6g1073 232 ProSiteProfiles K-box domain profile. 85 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mal6g1073 232 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal6g1073 232 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal6g1073 232 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mal6g1073 232 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Mal6g1073 232 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 232 - -
Mal6g1073 232 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1073 Mal-Chr6 16338919 16340611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g1073 1 224 MADS-box Gene Family AT3G54340 48.444 1.05e-67 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mal6g1073 K-box 7.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1073 K09264 - gmx:100784496 379.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g1073 6 16338919 16340611 Mal6g1073 6 16338919 16340611 ECH