Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1070 ATGCTTTACCAAACTTCCTATCCTCTTCTCTTTCAATTTCCTCCTTTGCCTTCTTCTTCCACCATTCCTCTCTCAACCACATCACCACAACAAGTTTCTCTCTTTTCTCATCTTCCTCCCTCACAGGCTTCAAAAACAGAAATGGAGTGCGTTGAAACAGCTTTGAAAACCAGTTTAAGGAAAGACATAACCTTAAAAACCACTCCTCAAACATTTGTTGATGAAATTTCAGTTCTCAATGCACAAAATGGAACAACCTCTGACGACTTTTTCGTTGACGACCTCCTTGACTTCTCTCACGTTGAAGAACCACAACAAGAACAAGAGGAAGAACAACAACAACAAGAACACTCTCCTTGTCTCTCTCTCAAACAAACCCATGAAACTTCAAACCTCAACAACACCTTCTCTCTCAAAGAAGATTTTTCTTCTCTACCCAACAATGACCTCAATGTTCCGAATGATGATGTTGCGGATTTGGAATGGCTTTCTCATTTTGTTGAAGATTCTGATTCCTTTTCAGAATTCTCTGCGGCCATGCCGGTTGTAGCGTTAACAACAACGGAGAAAAACCCTAAAAGCCTCGTTGTTGTTGAAGAGCCCAAGCCCAAGCCCAAACAAGAAAGCCCGGTTGTTACTACTTTCAAAACACCGGTTCAGACCAAAGCAAGAAGCAAAAGAGCCAGAACCGGTGTTAGGGTTTGGCCATTCGGGTCAACCGATTCTTCTTCAAGCTCAACCACCACCACAACTTCATCTTCCACCTCTTCATCTCCAACTAGTCCATTGCTGATTTACACCAACATGCTTCAAAGTTTTGACTCGGTTCAGGTGAAGAAACCGAAGAAAATTGCTTCTTCTAACGGGTCGGGTCATGGTGCGGTGGTTCTGGCTGCGCCGCTGCGACGGTGTAGTCATTGTGGCGTAACAAAGACTCCTCAGTGGAGAAGTGGTCCTCTTGGAGCAAAAACTCTTTGTAATGCATGTGGGGTCCGTTACAAATCGGGTCGATTATTACCCGAATATCGACCCGCTTGTAGCCCTACATTTTCAAGTGAATTGCACTCCAACCACCACCGGAAAGTTCTCGAGATGCGGCGGAAGAAGGAGGTTGTTGGTGGTGTTGAAATTGAAGTTGAAACCGGTTTGTCCGGTTCCCCGGTTGTTTCAAGTTTTTGA 1179 0.4453 MLYQTSYPLLFQFPPLPSSSTIPLSTTSPQQVSLFSHLPPSQASKTEMECVETALKTSLRKDITLKTTPQTFVDEISVLNAQNGTTSDDFFVDDLLDFSHVEEPQQEQEEEQQQQEHSPCLSLKQTHETSNLNNTFSLKEDFSSLPNNDLNVPNDDVADLEWLSHFVEDSDSFSEFSAAMPVVALTTTEKNPKSLVVVEEPKPKPKQESPVVTTFKTPVQTKARSKRARTGVRVWPFGSTDSSSSSTTTTTSSSTSSSPTSPLLIYTNMLQSFDSVQVKKPKKIASSNGSGHGAVVLAAPLRRCSHCGVTKTPQWRSGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEVVGGVEIEVETGLSGSPVVSSF* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1070 392 PANTHER GATA TRANSCRIPTION FACTOR 48 372 - -
Mal6g1070 392 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 301 360 - -
Mal6g1070 392 Pfam GATA zinc finger 304 338 IPR000679 GO:0006355|GO:0043565
Mal6g1070 392 PANTHER GATA TRANSCRIPTION FACTOR 48 372 - -
Mal6g1070 392 MobiDBLite consensus disorder prediction 236 261 - -
Mal6g1070 392 SMART GATA_3 298 352 IPR000679 GO:0006355|GO:0043565
Mal6g1070 392 MobiDBLite consensus disorder prediction 217 261 - -
Mal6g1070 392 CDD ZnF_GATA 303 351 IPR000679 GO:0006355|GO:0043565
Mal6g1070 392 ProSitePatterns GATA-type zinc finger domain. 304 329 IPR000679 GO:0006355|GO:0043565
Mal6g1070 392 ProSiteProfiles GATA-type zinc finger domain profile. 298 334 IPR000679 GO:0006355|GO:0043565
Mal6g1070 392 Gene3D - 299 371 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1070 Mal-Chr6 16210749 16212165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g1070 52 384 C2C2-Gata Transcription Factor Family AT5G66320 46.957 2.53e-75 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mal6g1070 GATA 3.6e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1070 - - var:108335072 339.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g1070 6 16210749 16212165 Mal5g3364 5 97477558 97478859 ECH
Mal6g1070 6 16210749 16212165 Mal6g1070 6 16210749 16212165 ECH
Mal6g1070 6 16210749 16212165 Mal5g3364 5 97477558 97478859 PCT