Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1045 ATGTCTGCTGCCGGAGAAGTTGCCGTCGTTGAAAAGCCGGTGGAGCCTAAAGCTTCAAAAGAGAAGAAGCCTAAAGCTTCACATCCTCCATATTTTCAGATGATTAAGGAGGCTTTGTTGGCTCTGAAAGAGAGAAATGGCTCAAGTCCTTACGCTATAGCCAAATACATGGAGAAGAAGTTTAAGCCGGTGCTCCCAGCTAATTTCAAGAAGATGCTGAGCTTGCAGCTGAAGAATCAAGCTGCTAGAGGCAAGCTGGTGAAGGTTAAGGCTTCTTACAAACTCTCAGAAGCTGAGAAGCCGAAGAAGGAAAAAACCGTCGCCGCTAAAGTTGCGAAGGCTAAGGGAGCAGAGAAGAAGCAACAGAGCCAGAAGAGTAAGAAAAAGAAGGTTGTGAAGAAGAAGAGTAAGAAGGTGGCTGGGCCTGGGAAGCCCAAGTCCATTAAGTCATCGACTAATAAAAGGGGTGGAAAAGCTAATGTTGCTACTGCATGA 495 0.4606 MSAAGEVAVVEKPVEPKASKEKKPKASHPPYFQMIKEALLALKERNGSSPYAIAKYMEKKFKPVLPANFKKMLSLQLKNQAARGKLVKVKASYKLSEAEKPKKEKTVAAKVAKAKGAEKKQQSQKSKKKKVVKKKSKKVAGPGKPKSIKSSTNKRGGKANVATA* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1045 164 SUPERFAMILY "Winged helix" DNA-binding domain 24 107 IPR036390 -
Mal6g1045 164 MobiDBLite consensus disorder prediction 13 27 - -
Mal6g1045 164 PANTHER HISTONE H1 11 160 - -
Mal6g1045 164 PANTHER HISTONE H1 11 160 - -
Mal6g1045 164 MobiDBLite consensus disorder prediction 97 121 - -
Mal6g1045 164 MobiDBLite consensus disorder prediction 122 142 - -
Mal6g1045 164 MobiDBLite consensus disorder prediction 1 28 - -
Mal6g1045 164 Pfam linker histone H1 and H5 family 28 94 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mal6g1045 164 PRINTS Histone H5 signature 41 58 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mal6g1045 164 PRINTS Histone H5 signature 14 35 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mal6g1045 164 PRINTS Histone H5 signature 122 136 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mal6g1045 164 MobiDBLite consensus disorder prediction 146 164 - -
Mal6g1045 164 CDD H15 25 106 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mal6g1045 164 MobiDBLite consensus disorder prediction 97 164 - -
Mal6g1045 164 Gene3D - 21 110 IPR036388 -
Mal6g1045 164 SMART h15plus2 25 92 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mal6g1045 164 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 27 97 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1045 Mal-Chr6 15682081 15682716 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g1045 29 97 Single Myb Histone (SMH) Gene Family AT1G72740 37.681 4.71e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1045 K11275 - gmx:100500169 135.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g1045 6 15682081 15682716 Mal6g1045 6 15682081 15682716 ECH