Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0972 ATGGATTTTGTACCAAATCCATGTCCTTCTCGTTCTTCTTTGTTCGGTTCCTTTGGGAATCTCGTTGACAAGGTTAAACAATTTGGTACCCTCGCAATTTCTGCTATTATTGGGAACATTTTTTCGGCGATCTTGACCTTTTGTTTTGCATTAGTTGGAACATTGTTGGGAGCTATGACAGGAGCTTTGATAGGTCAAGAGACCGAGAGCGGTTTCATTCGAGGTGCTGCTGTTGGTGCTATATCTGGAGCTGTTTTTTCCATTGAAGTGTTTGAATCATCTCTTGTTCTTTGGCATTCTGATGAATCTGGGATTGGATGTCTTTTATACTTGATTGATGTTATTGTTAGCTTGTTGAGTGGGAGACTTGTGCGTGAGAGGATAGGTCCTGCAATGTTGAGTGCTGTTCAAAGTCAGATGGGTGCTGTTGAAACAAGCTTTGATGAGGTTCAAAACATCTTTGACATTGGTGGTTCTAAAGGGTTGTCCAGAGATTCGGTTGCGAGGATCCCAAAAACCAAAATCACCGCTGACAATATTGATGCATCAGGGGAGAAGGTTTCTTGTTCAGTTTGTCTCCAGGACTTTCAGCTTGGAGAGACAGTTAGAAGTTTACCTCATTGTCATCACATGTTTCACCTACCTTGCATAGATGTGTGGCTCTTAAGGCATGGTTCTTGCCCATTATGCAGAAGGGATCTGTAA 705 0.4227 MDFVPNPCPSRSSLFGSFGNLVDKVKQFGTLAISAIIGNIFSAILTFCFALVGTLLGAMTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWHSDESGIGCLLYLIDVIVSLLSGRLVRERIGPAMLSAVQSQMGAVETSFDEVQNIFDIGGSKGLSRDSVARIPKTKITADNIDASGEKVSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDVWLLRHGSCPLCRRDL* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0972 234 Pfam Ring finger domain 188 231 IPR001841 -
Mal6g0972 234 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 10 234 IPR044523 -
Mal6g0972 234 SUPERFAMILY RING/U-box 183 234 - -
Mal6g0972 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 234 IPR013083 -
Mal6g0972 234 CDD RING-H2_PA-TM-RING 189 231 - -
Mal6g0972 234 ProSiteProfiles Zinc finger RING-type profile. 189 231 IPR001841 -
Mal6g0972 234 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE, YMGG-LIKE GLY-ZIPPER-RELATED 10 234 - -
Mal6g0972 234 SMART ring_2 189 230 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0972 Mal-Chr6 14569792 14571256 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0972 20 234 C3H Transcription Factor Family AT5G66070 76.279 7.69e-116 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0972 - - lja:Lj2g3v1670720.1 417.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g0972 6 14569792 14571256 Mal5g3289 5 96181136 96184066 PCT