Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0960 ATGGAGGATTCTCCAGTAAGAAGGCTTTCAAGGTCCCCTTCCCCATGGAGGGCTCAATCAAGATCTAGGTCCAGGTCTCAGTCAGGATCCCTTGAAAGGCACAGGCCCAGGTCTATCTCAAGGTCGCCTGAAATGCAAAGGCCTAGGTCTCTGTCAAGGTCTCCTGAAAGGCAAATGCCTAGGTCTCGGTCAAGGTCTCTTGAAAAGCAAAGGCCTGCGTCTCGGTCAAGGTCTCGTGAAATGCCAAGGCCTAGGTCTCGGTCAAGATCTCTTGAAAGGCAAAGGACTAGATCCCCCTTGAGAAGTCGTGGCAGATCAAGATCAAGAAGTCCTGAGAGGAATGGTGGGGATACACTTTATGTGACTGGCCTATCTTCTAGGGTTACCGAGAGAGATCTAGAGGAGCATTTCTCTAAGGAAGGAAAGGTTGCTTCATGTTTTCTTGTGGTGGAGCCCCGTACGCGTATCTCTCGTGGTTTTGCTTTTGTTACTATGGATACTGTTGAGGATGCAAACCGCTGTATCAAGCACCTCAATCAATCCGTTTTAGAGGGTCGCTACATCACTGTTGAGCGGTCAAAGAGAAAGCGGCCAAGAACTCCCACACCTGGGCACTATCTTGGGCTGAAAAATACTAGAGACTATGGATCTCGTGGTGGTGACCGTGGAAGGCCTCGTGGTGGATTTGGTCGTGATGATTATCCATATCATAGGTCTCCAAGGCGCTCACCATATCGAGGGGGCAGGGATTATTCACCAAGGCACTCTCCCTATGGTGGAAGGTATAGGAGGGATAGGTCTAGGTCACCTCCTTATGCTGCATATGGTAGCCCAGATAGGAGGTATGCACGTGGGCCTAGGTGA 864 0.5035 MEDSPVRRLSRSPSPWRAQSRSRSRSQSGSLERHRPRSISRSPEMQRPRSLSRSPERQMPRSRSRSLEKQRPASRSRSREMPRPRSRSRSLERQRTRSPLRSRGRSRSRSPERNGGDTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDTVEDANRCIKHLNQSVLEGRYITVERSKRKRPRTPTPGHYLGLKNTRDYGSRGGDRGRPRGGFGRDDYPYHRSPRRSPYRGGRDYSPRHSPYGGRYRRDRSRSPPYAAYGSPDRRYARGPR* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0960 287 SMART rrm1_1 118 191 IPR000504 GO:0003723
Mal6g0960 287 Gene3D - 49 202 IPR012677 -
Mal6g0960 287 MobiDBLite consensus disorder prediction 215 249 - -
Mal6g0960 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 188 IPR000504 GO:0003723
Mal6g0960 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 195 IPR000504 GO:0003723
Mal6g0960 287 MobiDBLite consensus disorder prediction 50 112 - -
Mal6g0960 287 CDD RRM_RBMX_like 116 195 - -
Mal6g0960 287 PANTHER RNA RECOGNITION MOTIF 3 60 - -
Mal6g0960 287 PANTHER RNA RECOGNITION MOTIF 61 283 - -
Mal6g0960 287 MobiDBLite consensus disorder prediction 27 42 - -
Mal6g0960 287 MobiDBLite consensus disorder prediction 189 287 - -
Mal6g0960 287 MobiDBLite consensus disorder prediction 1 123 - -
Mal6g0960 287 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 3 60 - -
Mal6g0960 287 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 61 283 - -
Mal6g0960 287 SUPERFAMILY RNA-binding domain, RBD 114 226 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0960 Mal-Chr6 14397891 14400802 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0960 84 202 Eukaryotic Initiation Factors Gene Family AT1G49760 27.642 2.28e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0960 K12897 - gmx:100527350 275.018