Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0920 ATGGGAGGTGACGCAACCGCTGAAACTTCGACGGAGCCACAATCCACCGACGGAGGAGTTAAGATCAACATTCGTTGTTCCAATGGTTCCAAATTTTCCGTTCAGATTAGCCTCGATTCCACCGTTGGTTCCTTCAAGGATGTTGTTGCTCAGAACTGCGATATTGCTGCTGATCAACAGCGTTTGATTTATAAGGGAAGGATTCTCAAGGATGATCAAACGCTTCAAAGCTATGGTTTGGAGGCAGATCACACTGTCCATTTGGTTCGTGGTTTTACGCCTGCCAATACAACTGGTGGGACTAATACCACTGGTGCCAATACCACAACTACTAATGCTAGAGGTGCCGGTGCTAATGAGGGTGGGGGATTAGGAGGACCTGGACTTGGAGCTTCACTTTTTCCAGGACTAGGAGGTCTCAACGGGATGGGGGGAGGAGGTGGCCTCAATAGCTTATTTGGAGCGGGTCCTCCAGATCTTGAACAATTGCAGCAACCATTTTTGTCAAATCCCAATTTAGTGAGAGATATAATGAACTCACCTGCCATGCAAAATTTATTAAATAATCCCGACATAGTGCGTAATCTTTTAATGAGTAACCCACAGATGCAAGAGCTCATGGATAGAAACCCTGAGCTGGCACACATACTTAATGATCCAAGCACACTTCGCCAGACACTTGAGGCTACAAGGAACCCTGAGATCATGCGTGAAATGATGAGGAATACAGACAGAGCTATGAGCAATATTGAGTCTTCTCCTGAGGGGTTCAACATGCTGAGGCGCATGTATGAAAATGTTCAAGAACCATTTTTAAATGCCACCACAATGGCAGGGAATGACAGTTCCAGAATGTTGGGGACTCAAGGTGGTCAAACGAGGAATCAATCGACCAATCCCTCAACTACTAATGCTGAGGCAACTTCCCCTGTACCCAATACTAATCCACTTCCCAATCCTTGGTCATCTGCTCCAACTGGAGGTGCCCAAACTAATGTCAGGAGGTCGACACCTACTGCTGCGGATGCTCGGCAGCAGACGCCCACTGGCTTAGGCGGGCTTGGCATGCCAGATCTCGAAGGCATGTTGGGTGGTATGCCAGATGCTGGGTCATTGACCCAATTAATGCAAAATCCAGCTATTTCACAAATGATGCAAAGTATCATGTCCAATCCTCAAACAATGAATCAGATTCTTGGTATGAATACTGATCAGCGTGGGATGCCTGATATGAATTCAATGAGAGAAGTGATGCAAAACCCAGAGTTTCTTCGCATGTTTTCCTCACCCGAGACAATGCAGCAACTCTTGTCTATGCAGCAAGCTCTTATGACTCAACTTGGACAGCAGCAATCAACACAGGAACCAGGTCAAACAGGTGGAGGCACTGTGAACAACTTGGGGTTGGAGATGTTATCGAGCATGTTTGGTGGACTTGGTGCTGGTAGCCTAGCTGTTCCAAATAGATCAAATGAGCCACCGGAGCAACTGTATGCTACCCAACTTACGCAGCTTCAAGAGATGGGATTCTTTGACACGCAAGAGAACATAAGGGCTCTTATTGCTACATCAGGAAATGTTCATGCAGCGGTTGAGCGACTTTTGGGAAACCCCGGACAGTAG 1623 0.4689 MGGDATAETSTEPQSTDGGVKINIRCSNGSKFSVQISLDSTVGSFKDVVAQNCDIAADQQRLIYKGRILKDDQTLQSYGLEADHTVHLVRGFTPANTTGGTNTTGANTTTTNARGAGANEGGGLGGPGLGASLFPGLGGLNGMGGGGGLNSLFGAGPPDLEQLQQPFLSNPNLVRDIMNSPAMQNLLNNPDIVRNLLMSNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNDSSRMLGTQGGQTRNQSTNPSTTNAEATSPVPNTNPLPNPWSSAPTGGAQTNVRRSTPTAADARQQTPTGLGGLGMPDLEGMLGGMPDAGSLTQLMQNPAISQMMQSIMSNPQTMNQILGMNTDQRGMPDMNSMREVMQNPEFLRMFSSPETMQQLLSMQQALMTQLGQQQSTQEPGQTGGGTVNNLGLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYATQLTQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNPGQ* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0920 540 PANTHER UBIQUILIN 3 540 - -
Mal6g0920 540 SMART ubq_7 20 91 IPR000626 GO:0005515
Mal6g0920 540 MobiDBLite consensus disorder prediction 1 20 - -
Mal6g0920 540 CDD UBA_PLICs 498 536 - -
Mal6g0920 540 Gene3D - 195 253 - -
Mal6g0920 540 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 492 537 IPR015940 -
Mal6g0920 540 MobiDBLite consensus disorder prediction 277 312 - -
Mal6g0920 540 SUPERFAMILY Ubiquitin-like 9 104 IPR029071 -
Mal6g0920 540 Gene3D - 7 103 - -
Mal6g0920 540 Pfam Ubiquitin family 22 89 IPR000626 GO:0005515
Mal6g0920 540 SMART CBM 146 187 IPR006636 -
Mal6g0920 540 SMART CBM 200 239 IPR006636 -
Mal6g0920 540 SMART CBM 401 436 IPR006636 -
Mal6g0920 540 SMART CBM 356 398 IPR006636 -
Mal6g0920 540 ProSiteProfiles Ubiquitin domain profile. 20 89 IPR000626 GO:0005515
Mal6g0920 540 SMART uba_6 498 536 IPR015940 -
Mal6g0920 540 MobiDBLite consensus disorder prediction 277 353 - -
Mal6g0920 540 MobiDBLite consensus disorder prediction 93 116 - -
Mal6g0920 540 CDD Ubl_Dsk2p_like 20 92 - -
Mal6g0920 540 Pfam UBA/TS-N domain 498 534 IPR015940 -
Mal6g0920 540 MobiDBLite consensus disorder prediction 93 121 - -
Mal6g0920 540 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 3 540 - -
Mal6g0920 540 Gene3D - 480 540 - -
Mal6g0920 540 SUPERFAMILY UBA-like 494 536 IPR009060 GO:0005515
Mal6g0920 540 MobiDBLite consensus disorder prediction 320 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0920 Mal-Chr6 13894040 13899131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0920 20 89 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 30.000 1.07e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0920 K04523 - gmx:100797539 820.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g0920 6 13894040 13899131 Mal5g3245 5 95349586 95354916 PCT