Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0899 ATGCCGAAAGCTCTCTCCGACGCCAAACCCGCCGATAACCGGTTGAAGCGCAAGGGCGCTGGTACTGGAACCAAGCAATCGAAGAAGGCTAAGGATCCTAACAAGCCGAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCATGTCTGAGTTCAGAGAGAGGTTCAAGAAGGAGAATCCGAGCAACAAATCCGTTGCTGTGGTTGGGAAAGCTGGTGGAAAAGAATGGAAAGCGCTGTCTGATGATGAGAAGGCTCCTTTCATTGCTAAGGCAGAAAAGTTGAAAGAGGAGCATGAGAAGGCTATGCGTGTTTACAATTTGGGAATTACTGAGAAGAATGCTTCCGAGGAAGAAGGATCTGATAAGTCAAAGTCTGAAGTGAATGATGAAGATGAGGATGGTGATGATGAAGAGGATGAAGAGTAA 423 0.4681 MPKALSDAKPADNRLKRKGAGTGTKQSKKAKDPNKPKRPPSAFFVFMSEFRERFKKENPSNKSVAVVGKAGGKEWKALSDDEKAPFIAKAEKLKEEHEKAMRVYNLGITEKNASEEEGSDKSKSEVNDEDEDGDDEEDEE* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0899 140 MobiDBLite consensus disorder prediction 1 41 - -
Mal6g0899 140 SUPERFAMILY HMG-box 22 105 IPR036910 -
Mal6g0899 140 CDD HMG-box 36 101 - -
Mal6g0899 140 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 36 105 IPR009071 -
Mal6g0899 140 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 6 137 IPR031061 -
Mal6g0899 140 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 6 137 - -
Mal6g0899 140 SMART hmgende2 35 106 IPR009071 -
Mal6g0899 140 Gene3D High mobility group box domain 21 126 IPR036910 -
Mal6g0899 140 Pfam HMG (high mobility group) box 36 105 IPR009071 -
Mal6g0899 140 MobiDBLite consensus disorder prediction 106 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0899 Mal-Chr6 13466444 13467443 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Mal6g0899 HMG_box 2.7e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0899 K25507 K22507 ahf:112797235 185.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g0899 6 13466444 13467443 Mal6g0899 6 13466444 13467443 ECH
Mal6g0899 6 13466444 13467443 Mal5g3238 5 95033561 95034737 ECH