Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0876 ATGACTCGACCGCTGAGAATTCTCCTATCAATGGAAAACATGCCCACCGTCGTAGTAACAGCGCCGCCACCGGAGGCCGTGAATTTGGAGTCAGATTTCGTCGTAATTCTCGCAGCTTTGCTCTGTGCTTTAATATGCGTCGTCGGACTCATCGCCGTCGCACGTTGCGCCTGGCTCCGACGAGACTCCGGCGCCGGAAACTCACCTCAACAAGCTTTAGCCAACAAAGGACTAAAGAAGAAAGTTCTACAATCACTTCCGAAATTCGCTTACGTAGACAGCAACCCTGGAAAATGGTTAGCAACGACGGAATGCGCGATTTGTCTCTCCGATTTCGCCGCCGGTGATGAGATCCGTGTGCTGCCGCAGTGTGGACATGGATTTCACGTTGGTTGTATTGACACGTGGCTTGGGTCCCACTCTTCTTGCCCTTCTTGTAGGCAGATTCTGGCGGTGACGAGGTGTCAGAAGTGTGGTAGGTTTCCGGCGACCGGAGGTGAAGCTGCCGGAGTTGCGGTTAGTGAACCGGAGTTGAAAGCTAGAGAAGATGGCAATGTCGGTGCAAATAGTAATAGTGGGGGTGATAGCTGTAGTAATAATTCTGCACATCACAATCATAGTGGAAACAGTGGGTTCTTGCCTTAA 645 0.5132 MTRPLRILLSMENMPTVVVTAPPPEAVNLESDFVVILAALLCALICVVGLIAVARCAWLRRDSGAGNSPQQALANKGLKKKVLQSLPKFAYVDSNPGKWLATTECAICLSDFAAGDEIRVLPQCGHGFHVGCIDTWLGSHSSCPSCRQILAVTRCQKCGRFPATGGEAAGVAVSEPELKAREDGNVGANSNSGGDSCSNNSAHHNHSGNSGFLP* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0876 214 MobiDBLite consensus disorder prediction 176 214 - -
Mal6g0876 214 CDD RING-H2_PA-TM-RING 104 147 - -
Mal6g0876 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 152 IPR013083 -
Mal6g0876 214 SMART ring_2 105 146 IPR001841 -
Mal6g0876 214 MobiDBLite consensus disorder prediction 185 214 - -
Mal6g0876 214 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 182 - -
Mal6g0876 214 Pfam Ring finger domain 104 147 IPR001841 -
Mal6g0876 214 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 182 - -
Mal6g0876 214 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Mal6g0876 214 SUPERFAMILY RING/U-box 83 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0876 Mal-Chr6 13152370 13153014 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0876 1 184 C3H Transcription Factor Family AT1G76410 57.812 1.77e-63 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0876 - - gmx:100787383 318.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g0876 6 13152370 13153014 Mal5g3220 5 94478080 94478694 PCT