Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0863 ATGAGTGATACAAAAGAAAACGAGGAAGCGGGCGTTCATGCGACTGTTACCGCAGAGGAAACTGCCAATGTCATTGGTGAAAGTGAAAGTTTATACCAAGTTTCAACTAGTCCACAAGTAAGAGATGATCATGAGATGGTTATTGATAATCTTGCTGGCCTGGATTCATATCTTGATCAAGAGATGCATCTTGAAGTTCAACCGGTTAATGTAGAGGAAACTTTGAAGAATGTTGAAAATGTGTCGAATGATGTTAAAATTGGGAAGGAAGAGATAATTGTTGACGATGAAAATGTGAAACCCAAGGTTGTTTCGGAAGATGTTTCACAAGAAAATGTTCAAGATACCCTTCACTCGGTCCCAGTTGAGGCGGTTGATAGTCAGATTTTGAATACAACTGAGTGTGAAGATGCTTCTGATGTGAAGTTGGATGCCAAAAAACTTCCGCAGAGTAGTAGCGGTGTTGAGAATGATGATACTCCATGTCAAAATAGTGTTAGTAATGGTGATGTTGAAATGACAGCGGTGGAGGTTGAGGTGAAGCCTGAAGTTTGTGAAGCGGCTGATAGTAAAACTTGTGACAATGAACTTATATCGTCAAGTCATAGCAATCCTACTACACCACAACCTGTCCCTGATGATACAAATGAACCTATACCGTCAAGTCATAATGATCCTACTACACCACAACCTGCCCCTGATGATACAAGATCAGAAATCAAGAATGTTTTAGAAGTTGAAAGTAAGGATGGTGAAGAACAAGTTGCTGAGCCTGTAGATAATGAGAACCCAGATTCGCCGCAGAACATGTTTTTCTTGGATGCTGATCATTATTATGATGGTAATGAGTCGGGAACTGAAGAGGACCAAGCAGCTTTTACGAAGGAGCTTGAAACTTTCTTTAGGGAGAGGAGCATGGAATTCAAACCTCCCAAATTTTATGGAGAATGGCTTAATTGCCTTAAGTTATGGAGAGCTGTAATGAGATTGGGAGGCTATGAGAAGGTAACCTCGTGTAAGTTGTGGCGAAGTGTGGGAGAGTCTTTCAAACCTCCAAAGACATGCACCACAGTTTCCTGGACTTTCCGGGGATTTTATGAGAAGGCAATTCTTGATTACGAAAGGCATAACATAAAAGGTGGCGAGCTGAATGTGCCTATTGCTTCTCCAGCAGAGCCTGTGAATGTTGAAAATCAGGGTTTAGCATCAGGTAGATCCCGGAGATATGCTGCTGAACAGGCTATGCGGGGTTGGCACTCACAACGTCTTCTTGGCAATGGTGAAGTTAGTGACCCTATTATAAAGGATAGGAATGCTGTGTCTGTGCAAAAGCGTGAAAAGCAGCTTAAGAGCATCAATATACATAAACGTAAGAGCCCATCTTATATGGATAATGCAGTCAAAGCAGCACGCAGCAAACCCTTAAGACCACAGTTGGGAACAGCTGTGGTTGACATTGGACCTCCTGCTGATTGGGTAAAAGTCAATGTACAAAAAACTAAAGATTGTTTCGAAATATATGCTTTAGTTCCTGGCCTTCTGCGGGAGGAGGTCCGTGTTCAATCAGACCCAGCAGGACGTTTGGTCATAAGTGGTGAGCCTGAGCATCCCAATAATCCTTGGGGTGTGACACCTTTCAAAAAGGTTGTGAGTTTGCCCTCAAGAATTGATCCTCATCAGACATCAGCTGTGGTAACGCTGCATGGACAATTGTTTGTTCGTGTCCCATTTGAACAGTCAGAATAG 1746 0.425 MSDTKENEEAGVHATVTAEETANVIGESESLYQVSTSPQVRDDHEMVIDNLAGLDSYLDQEMHLEVQPVNVEETLKNVENVSNDVKIGKEEIIVDDENVKPKVVSEDVSQENVQDTLHSVPVEAVDSQILNTTECEDASDVKLDAKKLPQSSSGVENDDTPCQNSVSNGDVEMTAVEVEVKPEVCEAADSKTCDNELISSSHSNPTTPQPVPDDTNEPIPSSHNDPTTPQPAPDDTRSEIKNVLEVESKDGEEQVAEPVDNENPDSPQNMFFLDADHYYDGNESGTEEDQAAFTKELETFFRERSMEFKPPKFYGEWLNCLKLWRAVMRLGGYEKVTSCKLWRSVGESFKPPKTCTTVSWTFRGFYEKAILDYERHNIKGGELNVPIASPAEPVNVENQGLASGRSRRYAAEQAMRGWHSQRLLGNGEVSDPIIKDRNAVSVQKREKQLKSINIHKRKSPSYMDNAVKAARSKPLRPQLGTAVVDIGPPADWVKVNVQKTKDCFEIYALVPGLLREEVRVQSDPAGRLVISGEPEHPNNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0863 581 SMART bright_3 288 379 IPR001606 GO:0003677
Mal6g0863 581 SMART ARID_2 284 374 - -
Mal6g0863 581 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 69 580 IPR045147 GO:0006357
Mal6g0863 581 SUPERFAMILY ARID-like 280 387 IPR036431 GO:0003677
Mal6g0863 581 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 481 581 IPR002068 -
Mal6g0863 581 CDD ARID 289 374 - -
Mal6g0863 581 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 69 580 - -
Mal6g0863 581 MobiDBLite consensus disorder prediction 150 168 - -
Mal6g0863 581 Gene3D - 287 384 IPR036431 GO:0003677
Mal6g0863 581 MobiDBLite consensus disorder prediction 238 256 - -
Mal6g0863 581 CDD ACD_sHsps-like 496 576 - -
Mal6g0863 581 ProSiteProfiles ARID domain profile. 287 378 IPR001606 GO:0003677
Mal6g0863 581 MobiDBLite consensus disorder prediction 148 168 - -
Mal6g0863 581 MobiDBLite consensus disorder prediction 195 235 - -
Mal6g0863 581 MobiDBLite consensus disorder prediction 195 267 - -
Mal6g0863 581 Gene3D - 487 581 IPR008978 -
Mal6g0863 581 Pfam ARID/BRIGHT DNA binding domain 290 374 IPR001606 GO:0003677
Mal6g0863 581 SUPERFAMILY HSP20-like chaperones 490 577 IPR008978 -
Mal6g0863 581 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0863 Mal-Chr6 12925747 12932346 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0863 282 579 ARID Transcription Factor Family AT1G76510 61.716 1.24e-127 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Mal6g0863 HSP20 2.5e-05 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0863 - - cam:101506818 920.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g0863 6 12925747 12932346 Mal6g0863 6 12925747 12932346 ECH