Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0852 ATGGCCGCCGCAGCACGTCCCCTTGTCACCATCCAAACCCTAGAATCCGACATGGCCACTGATTCACCAACCACCCTCCCAATCCCCGATGTCATGCGTGCTGCAATCCGTCCCGATATCGTTAATTTCGTTCATTCCAACATCTCCAAAAACTCCCGCCAACCCTACGCCGTCAGCCGTAAAGCTGGCCATCAAACCTCCGCTGAGTCATGGGGTACCGGTCGTGCTGTTTCCCGTATCCCTCGTGTTGCTGGTGGTGGGACCCACCGTGCTGGACAGGCTGCTTTTGGTAACATGTGTCGTGGTGGTAGAATGTTTGCTCCAACAAGGATCTGGAGAAAATGGCATAGGAAGATTAACGTTAATCAAAAACGTTACGCTGTTGTTTCAGCTATAGCAGCTTCTGCTATACCTTCACTTGTTCTTGCTCGTGGTCATAAGATTGAGACTGTTCCTGAGTTTCCTCTTGTTGTCGCTGATTCCGCCGAAGGAGTTGAGAAAACTAAGGAAGCTATTAAGGTTTTGAAACAGGTTGGAGCTTTTGCTGATGCTGAAAAGGCGAAGGATAGCATTGGGATTCGACCGGGGAAGGGGAAAATGAGGAACAGGAGATATATATCGAGAAAGGGGCCGTTGATTGTATATGGGACTGAAGGGGCGAAGGCGGTGAAGGCTTTTAGGAATATTCCTGGTGTTGAGATTACTAATGTGGAGAGGTTGAATCTTTTGAAGCTTGCACCTGGTGGGCATTTGGGTAGGTTTGTGATTTGGACGAAATCGGCGTTTGAGAAATTGGATTCGATTTATGGGTCGTTTGATAAGGTTTCGGAGAAGAAGAATGGGTATGTGCTTCCTAGGGCTAAGATGGTGAATTCTGATTTGACTAGGATTATTAATAGTGATGAGGTGCAGAGTGTTGTGAGGCCGATTAAGAAGGATGTTAAGAGGGCCACGCTTAAGAAGAATCCTCTTAAGAATCTTAATGTTATGCTCAGGCTTAATCCTTATGCTAAGACTGCTAAGAGGATGGCTTTGCTTGCTGAGGCTGAAAGGGTTAAGTCTAAGAAGGAGAAGCTTGATAAGAAGAGGAAGACTGTCTCTAAGGAGGAGGCTTCTGCCATCAAGGCTGCAGGGAAAGCTTGGTATAATACCATGGTCTCAGATTCTGATTATACTGAATTTGACAACTTCTCTAAATGGCTTGGGGTTTCCCAGTAA 1218 0.4655 MAAAARPLVTIQTLESDMATDSPTTLPIPDVMRAAIRPDIVNFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVAGGGTHRAGQAAFGNMCRGGRMFAPTRIWRKWHRKINVNQKRYAVVSAIAASAIPSLVLARGHKIETVPEFPLVVADSAEGVEKTKEAIKVLKQVGAFADAEKAKDSIGIRPGKGKMRNRRYISRKGPLIVYGTEGAKAVKAFRNIPGVEITNVERLNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFDKVSEKKNGYVLPRAKMVNSDLTRIINSDEVQSVVRPIKKDVKRATLKKNPLKNLNVMLRLNPYAKTAKRMALLAEAERVKSKKEKLDKKRKTVSKEEASAIKAAGKAWYNTMVSDSDYTEFDNFSKWLGVSQ* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0852 405 PANTHER 60S RIBOSOMAL PROTEIN L4 2 405 IPR045240 -
Mal6g0852 405 Coils Coil 342 369 - -
Mal6g0852 405 Gene3D - 3 308 IPR023574 GO:0003735|GO:0005840|GO:0006412
Mal6g0852 405 Pfam 60S ribosomal protein L4 C-terminal domain 281 352 IPR025755 -
Mal6g0852 405 SUPERFAMILY Ribosomal protein L4 23 267 IPR023574 GO:0003735|GO:0005840|GO:0006412
Mal6g0852 405 Pfam Ribosomal protein L4/L1 family 28 266 IPR002136 GO:0003735|GO:0005840|GO:0006412
Mal6g0852 405 PANTHER BNAC03G35890D PROTEIN 2 405 - -
Mal6g0852 405 ProSitePatterns Ribosomal protein L1e signature. 120 146 IPR013000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0852 Mal-Chr6 12729028 12731475 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0852 2 405 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 83.168 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0852 K02930 - gmx:100779764 726.472