LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal6g0792	ATGAAGCCTTATATTTTCTTGTTACCTATGTCTTGGTATGTATACCTTCATGTTCTTCACCTTTTTACCTTAAACTTAATGTGTTTTGGTCCAAACAGAACTCTGACAATGGCACTAGGAAACCAAACTGATCATTTAGCTTTGCTCCAATTCAAGCAACTGATATCTAGTGATCCATATGGTATCCTAGATTCTTGGAATAGTTCAACTCACTTTTGCAACTGGCATGGAATCATATGCAGTCCCAAGCATCAAAGAGTTACAAAGTTGAAGCTGCCAGGATACAAGTTGCATGGATCCATATCTCCATATGTTGGCAATCTCTCTCATATGAGATTCCTTAACCTTGGAAACAACAATTTCAACAGAAACATTCCAAAAGAGTTGGGTCGTTTGTTAAGATTAAGATATTTTCTTCTATCCAACAACTCTCTGGTTGGAGAATTTCCTTTAAACTTGACAAAGTGCTCTGAGCTAATAAGAATAGACTTACAAGGAAACAATCTTATTGGAAAAATACCTAGCCAAATTGGTTCTCTTCAAAAGCTTCATAGGTTCTATATCGCAGCAAACAATTTATCCGGAAAAATCCCACCATCCATAAGGAATCTTTCATCCCTTATTGTTTTTTCGATCGGTTATAATAATTTGGTGGGAAATATTCCACAAGAAATGTGCTTCCTAAAACAATTAAAGGCTATAGCAGCGCATGTAAACAAATTGTCTGGTACGTTTCTTTCTTGTCTTTATAATATGTCATCTCTTAGTGGGATCTCACTTGCAGTGAATAACTTTAGTGGCTCTCTTCCTCCCAATATGTTCCACACTCTCCCTAACCTCTATTACTATGCAATTGGAGGAAATCAATTCTTTGGTCCACTCCCAACTTCCATTGCAAATGCTTCCACTTTGACATTATTTGATATTGCTGACAACCATTTTGTCGGACAAGTTCCAAATCTAGGGAAGCTAAAAAATCTTCTGGCGCTAGGTCTGGATGGCAACAATTTTGGTGACAATTCTACGAAGGATTTGGTGTTTTTAAAATCATTAGAAAATTGTAGTAAGTTGGAATCGTTTTCTATAGAAGATAATAATTTTGGAGGTAGTTTGCAAAATTTAATAGGTAATTTATCCACCAAACTTGATCAAATATATATTGGTTTCAATCAAATATATGGGAAAATCCCCATGGAATTAGGAAATCTAATTAACTTGAGAGGCTTGGGCATGTACGATAACCTTTTGGAAGGAACGATTCCAAACACTTTTGGGAAGCTTCAAAATATAGAAAGGTTAGGATTAAGTGGAAACAAATTATCAGGGGATATACCAGCCTTCATTTGCAACCTCAGTCAACTGTATGATTTACAACTAGATGCAAATATGTTAGAAGGGAATATTCCTCCAAATATAGGAAATTGTCAAAAGTTACAGAACCTAAACTTTTCAAGAAACAACCTTAGAGGATCTATACCCTTAGAGATTTTTAGTATTTCCTCTTTGACAATTTCGCTAGACTTGTCACGAAACTTATTGAGTGGCAGCTTACCAAAAGAAGTGGGTATTCTAAAAAGTATTGATTCGCTAGACTTCTCTGAGAATCATTTGTCTGGGGAGATTCCTGGAACCATTAGTGAATGCATAAGCTTAGAATACCTTCACTTGCAAGGGAACTCTTTAAACGGAACAATACCATCCTCTTTGGCTGCTCTCAAAGGTCTACAATATTTAGATCTTTCAAGAAATCAATTGTATGGACCAATTCCTGATGTTTTGCAAAATATCTCTGGTTTAGAATACTTGAATGTTTCTTATAACATGTTGGAAGGTGAGGTACCAACACACGGTGTCTTTGGAAATACAACCAAAGTAGCAATGATTGGAAACAACAAGCTTTGTGGAGGTATTTCAGAGTTACATCTACAACCATGCATAAAGGGTAGGAAACACACAAAAAACCATAATTTCATATTGATAGCAGTGATAGTTAGTGTGGTTTCTTTTCTTCTCATACTTTCATTTATCATAACTATCTACTGGATGAGGAAAAGAAATCAAAAGCGATCTTTTGATTCACCAACAGTTGATCAACTAACTAAGGTTTCATACCAAGAATTACATCAAGGAACTGATGGATTCTCGGATATAAACTTGATTGGATCAGGAAGTTTTGGCTCTGTGTACAGAGGAAATCTTGTGTCAGAAGATAATGTTGTTGCCGTAAAGGTCCTGAACCTCCAACGAAAAGGAGCTCACAAGAGTTTCATTGTTGAATGTAATGCACTAAAAAATATTAGACACCGAAATTTAGTTAAGGTTTTAACATGTTGTTCTAGTACAGATTTCAAAGGTCAAGAATTTAAAGCTTTAGTTTTTGATTACATGAAAAATGGAAGCTTAGAACAATGGTTGCATCCTGGAATTTTATACCCAGAGCCTCCAACAACGTTGGACCTCGGTCATAGATTAAACATCATTGTCGATGTTGCTTCTGCATTACATTATCTTCATCAAGAATGTGAGCAATTGGTCCTGCATTGTGATCTAAAGCCAAGCAATGTCCTTCTTGATGATGACATGGTTGCTCATGTGAGTGATTTCAGCATAGCAAGACTGGTCTCGACCATTGGTGGTACCTCTGATAAGAATACTAGTACAATTGGGATAAAAGGAACTGTTGGCTATGCTCCTCCAGAGTATGGAATGGGTTCAGAAGTGACCACAAGTGGTGACATGTATAGCTTTGGAATCCTTATGCTGGAAATACTTACCGGTAGAAGACCCACTGATGAAGTTTTTCAAGACAGTCAAAATCTGCATAATTTTGTTGCAATTTCATTTCCTGATAATATTATAGAGATTTTGGACCCACATCTTGTATCAAGAGATGTAGAAGTAGCAATACAAGATGGAAACCGTGTGAATCTTATTCCATGGGTAGAGGAATCCTTAGTTTCACTTTTTAGAATTGGACTTATTTGTTCAATGGAGTCACCGAAAGAAAGAATGAATATTGTGGATGTTACTAAAGAGCTTAACACAATCCGAAAGGCCTTTCTCGCTGGTGAGATAAACTGA	3081	0.3629	MKPYIFLLPMSWYVYLHVLHLFTLNLMCFGPNRTLTMALGNQTDHLALLQFKQLISSDPYGILDSWNSSTHFCNWHGIICSPKHQRVTKLKLPGYKLHGSISPYVGNLSHMRFLNLGNNNFNRNIPKELGRLLRLRYFLLSNNSLVGEFPLNLTKCSELIRIDLQGNNLIGKIPSQIGSLQKLHRFYIAANNLSGKIPPSIRNLSSLIVFSIGYNNLVGNIPQEMCFLKQLKAIAAHVNKLSGTFLSCLYNMSSLSGISLAVNNFSGSLPPNMFHTLPNLYYYAIGGNQFFGPLPTSIANASTLTLFDIADNHFVGQVPNLGKLKNLLALGLDGNNFGDNSTKDLVFLKSLENCSKLESFSIEDNNFGGSLQNLIGNLSTKLDQIYIGFNQIYGKIPMELGNLINLRGLGMYDNLLEGTIPNTFGKLQNIERLGLSGNKLSGDIPAFICNLSQLYDLQLDANMLEGNIPPNIGNCQKLQNLNFSRNNLRGSIPLEIFSISSLTISLDLSRNLLSGSLPKEVGILKSIDSLDFSENHLSGEIPGTISECISLEYLHLQGNSLNGTIPSSLAALKGLQYLDLSRNQLYGPIPDVLQNISGLEYLNVSYNMLEGEVPTHGVFGNTTKVAMIGNNKLCGGISELHLQPCIKGRKHTKNHNFILIAVIVSVVSFLLILSFIITIYWMRKRNQKRSFDSPTVDQLTKVSYQELHQGTDGFSDINLIGSGSFGSVYRGNLVSEDNVVAVKVLNLQRKGAHKSFIVECNALKNIRHRNLVKVLTCCSSTDFKGQEFKALVFDYMKNGSLEQWLHPGILYPEPPTTLDLGHRLNIIVDVASALHYLHQECEQLVLHCDLKPSNVLLDDDMVAHVSDFSIARLVSTIGGTSDKNTSTIGIKGTVGYAPPEYGMGSEVTTSGDMYSFGILMLEILTGRRPTDEVFQDSQNLHNFVAISFPDNIIEILDPHLVSRDVEVAIQDGNRVNLIPWVEESLVSLFRIGLICSMESPKERMNIVDVTKELNTIRKAFLAGEIN*	1027

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal6g0792	1026	SUPERFAMILY	Protein kinase-like (PK-like)	688	1013	IPR011009	-
	Mal6g0792	1026	Gene3D	Ribonuclease Inhibitor	154	236	IPR032675	-
	Mal6g0792	1026	ProSitePatterns	Protein kinases ATP-binding region signature.	720	743	IPR017441	GO:0005524
	Mal6g0792	1026	SUPERFAMILY	L domain-like	42	337	-	-
	Mal6g0792	1026	Gene3D	Ribonuclease Inhibitor	43	153	IPR032675	-
	Mal6g0792	1026	Pfam	Protein kinase domain	715	943	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mal6g0792	1026	ProSiteProfiles	Protein kinase domain profile.	714	1021	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mal6g0792	1026	PANTHER	OS04G0122200 PROTEIN	29	1022	-	-
	Mal6g0792	1026	SMART	serkin_6	714	1021	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mal6g0792	1026	Gene3D	Transferase(Phosphotransferase) domain 1	796	1022	-	-
	Mal6g0792	1026	SUPERFAMILY	L domain-like	350	635	-	-
	Mal6g0792	1026	Gene3D	Phosphorylase Kinase; domain 1	676	795	-	-
	Mal6g0792	1026	PANTHER	LRR RECEPTOR-LIKE KINASE	29	1022	-	-
	Mal6g0792	1026	Gene3D	Ribonuclease Inhibitor	237	342	IPR032675	-
	Mal6g0792	1026	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	845	857	IPR008271	GO:0004672\|GO:0006468
	Mal6g0792	1026	Gene3D	Ribonuclease Inhibitor	343	646	IPR032675	-
	Mal6g0792	1026	Pfam	Leucine rich repeat	550	609	IPR001611	GO:0005515
	Mal6g0792	1026	Pfam	Leucine rich repeat N-terminal domain	42	81	IPR013210	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal6g0792	Mal-Chr6	11628049	11631246	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal6g0792	36	1023	Receptor kinase-like Gene Family	AT3G47570	44.500	0.0	828

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XII-1	Mal6g0792		Pkinase	1.8e-38	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal6g0792	-		-	mtr:MTR_5g025930	1537.32