Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0777 ATGGGGTCTAGTAGTAGCAAAACAAGTTCTTCTTGTTCATCTTCTTCTTCTTGCAGTTTAAGAAAAGGTCGATCCAAACGGTATAAAGGTTTCCCTTCTTATTGTCTTGGAACTACTTCTGGATCTCGTGACAGTGATAATGATGACCAGGTTTGTGATCAGAATAAAGTAAATGGAAGTGACGTTACATACACCAGCAGCAATGAAATTGACTCAGATGAAGTGAAATCAGAGTCTTTTAGAAAAGTTAAATCTGACGAAATACCTTGTGTCCCTTCTAACATTGATCTTGATGAGTGGAGGCACACTGAATCCAGAACCGCTAGCAGCTCCGCACATGGTTCTTCAACTCAGTCTACAAACCCTGCAAGTCGGCTTCTTTCTCGCTTTAGCCTCATTCCGGGTAATATAAGCTTCAGACTTAGCCGAACCACCAGTTTAGGGTCATCTCGACCTTGTCCTGTTTCATCACCAGGTTTTTCAATATTCAACAGTGAAGATCAGCTTAGTCTGCATCCACGGCCTCCTGGAAGCTTGACTAATAGAAATGAAACTCAACAATGTAGTGACTTGCTTAATGCGTCTTTTGTTAATCAATTCCCTGTAGAGAATCATGAAAACACTTCTAATAATTTAAGTTCAAATGTCCCAACATTCGGTTTAAACGGCAACTTGTCGAGAAGTCCAATGTTGTCTCCTATCCAAGATATGGTTAGAGATGGATATGGTACAAGAGACATGCCTGGTATGAACTTATTTTCTCCAAGAATTCATACTGAGACAGGAAGTGTTGAGACAAGACATATGGATAGACGAAATGGAGCTCGAGAACCTGTTGATCGCAACGTTCGTTTCAGCCGAACTTTAAGTGTTGGAAGGCTTCGTGATAGAGTTCACCGCCGATCAGGGTTAGCTGACTTCACCTTTTGCCCTCTGCAACAAGAGAGAGAATTGAGAGATGCTAGTGAGGATAATGGAAGACAAGTAGGGGAGAGGGGTACAAGAGTGTCACCATCTGATCGTAACGCTTTAAATTCTCATACTACATCCGGATATCCTCTACCAAACATGTCTAGCTCCCCGTTTACCACCCAAGACTATGAGGTTGAGGCTTCACGGTCAAGAGAAACTAGATATCAGGACCTACTGGAACATAGGTCCAATTTCCTCGAACGGAGAAGAAGAATACGATCTCAGGTTCGTGCTCTTCAGCGGTTGGGTAGCCGGTTTGAAAATCTTTCTGGACATGACAGATCATGTATCTTGTCTGGTCAACATAGAAACGGTCGTTGTACATGCAGAATAACTAGCCACAATAACAATTCAAATTCAAATGATGATACAAATGCTAGAGCTAGTATATCAAGAATTGTTATGCTAGCCGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCGGTGGTTTTATCTTCCCGCCCTTCTGTATCTTCTATCGGATCTGTTCCTGCACCTGCCGAAGTTGTCGAATCCTTACCTGTCAAATTATACACAAAGTTGCACAAACATCAAGAAGAACCTGTACAATGCTATATATGCCTTGTGGAGTATGAAGATGGAGACAGCATGCGAGTACTGCCTTGCCATCATGAATTTCATACAACATGTATAGACAAGTGGCTGAAAGAAGTTCACAGGGTATGTCCACTATGTCGAGGGGACATTTGTATATCAGATTCACCAGCAACAGAGAACTAA 1722 0.4199 MGSSSSKTSSSCSSSSSCSLRKGRSKRYKGFPSYCLGTTSGSRDSDNDDQVCDQNKVNGSDVTYTSSNEIDSDEVKSESFRKVKSDEIPCVPSNIDLDEWRHTESRTASSSAHGSSTQSTNPASRLLSRFSLIPGNISFRLSRTTSLGSSRPCPVSSPGFSIFNSEDQLSLHPRPPGSLTNRNETQQCSDLLNASFVNQFPVENHENTSNNLSSNVPTFGLNGNLSRSPMLSPIQDMVRDGYGTRDMPGMNLFSPRIHTETGSVETRHMDRRNGAREPVDRNVRFSRTLSVGRLRDRVHRRSGLADFTFCPLQQERELRDASEDNGRQVGERGTRVSPSDRNALNSHTTSGYPLPNMSSSPFTTQDYEVEASRSRETRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCTCRITSHNNNSNSNDDTNARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPAEVVESLPVKLYTKLHKHQEEPVQCYICLVEYEDGDSMRVLPCHHEFHTTCIDKWLKEVHRVCPLCRGDICISDSPATEN* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0777 573 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 481 564 IPR013083 -
Mal6g0777 573 SUPERFAMILY RING/U-box 496 566 - -
Mal6g0777 573 MobiDBLite consensus disorder prediction 318 361 - -
Mal6g0777 573 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Mal6g0777 573 MobiDBLite consensus disorder prediction 107 123 - -
Mal6g0777 573 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 573 - -
Mal6g0777 573 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 573 - -
Mal6g0777 573 SMART ring_2 518 559 IPR001841 -
Mal6g0777 573 MobiDBLite consensus disorder prediction 338 361 - -
Mal6g0777 573 MobiDBLite consensus disorder prediction 1 21 - -
Mal6g0777 573 CDD mRING-H2-C3H2C2D_ZSWM2 517 560 - -
Mal6g0777 573 MobiDBLite consensus disorder prediction 52 70 - -
Mal6g0777 573 Pfam Ring finger domain 517 560 IPR001841 -
Mal6g0777 573 MobiDBLite consensus disorder prediction 1 71 - -
Mal6g0777 573 MobiDBLite consensus disorder prediction 94 123 - -
Mal6g0777 573 ProSiteProfiles Zinc finger RING-type profile. 518 560 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0777 Mal-Chr6 11412142 11416036 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0777 196 573 C3H Transcription Factor Family AT5G45290 54.897 1.63e-117 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0777 - - gmx:100815830 843.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g0777 6 11412142 11416036 Mal6g0777 6 11412142 11416036 ECH