Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0731 ATGTCTCCGGCAGCGGTGGTTACGGAGGAGGAAGGGCGGAGCAAACTGTTGTCGACGGTGGAACGGAATTACTTGGGATTGTCAGATTGTTCATCAGTGGACAGCTGTGATTCAACTCTTCCGAGTTTGTGTGATGAGAAAAAAGTGAACTTGAATTTGAAAGCTACTGAGTTGAGGTTGGGTCTTCCTGGATCTCAATCGCCCGAAAGGGAAATGGATTCGGATTTTTACTCAACAAAGCTTGATGAAAAACCATTGTTCCCTTTGCTTCCTGCTAAAGATGGGTTGCAGAAGAATGTGGTTTCGGGGAATAAGAGAGGATTCGCCGATACTGTTGATGGGTTTTCTCAGGGTAAGTTTAATGGTAATACAGGGATTAACGTGATGCTATCGCCTAGACCTGTTGGAGCTCAGGCGGGCACAGTGAAAGAAATGCCGAGTAAGGTTTTGCAGGAAAGGACTTGTGCAGCTAGAGGAACTACTGGTCATAATCATGCAGGTGCTGCTTCTGTCGCTGGCTGTGCACCGGCATCTAAGGCACAAGTGGTTGGTTGGCCTCCTATAAGATCATTTAGGAAAAACTCGATGGCCACCGCTTCCAAGAACAACGATGAAGTGGATGGAAAACCAGGTCCGACTGCACTCTTTGTGAAGGTCAGCATGGATGGTGCTCCCTATCTTAGGAAGGTAGATCTAAGAACTTATACAACATATCAGGAGCTATCTTCTGCCCTTGAGAAGATGTTCAGCTGTTTTACCCTAGGTCAGTGTGGTTCCCATGGAGCTCCAGGAAGAGAAATGATGAGTGAGAGCAAGCTGAGGGACCTTTTGCATGGTTCAGAATATGTTCTCACCTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGGGATGTACCATGGGAGATGTTCATTGATACTTGCAGAAGGCTGAAAATCATGAAGGGTTCTGATGCCATTGGCTTAGCTCCGAGGGCCATGGAAAAGACCAAAAGCAAGAGTTAG 1005 0.4657 MSPAAVVTEEEGRSKLLSTVERNYLGLSDCSSVDSCDSTLPSLCDEKKVNLNLKATELRLGLPGSQSPEREMDSDFYSTKLDEKPLFPLLPAKDGLQKNVVSGNKRGFADTVDGFSQGKFNGNTGINVMLSPRPVGAQAGTVKEMPSKVLQERTCAARGTTGHNHAGAASVAGCAPASKAQVVGWPPIRSFRKNSMATASKNNDEVDGKPGPTALFVKVSMDGAPYLRKVDLRTYTTYQELSSALEKMFSCFTLGQCGSHGAPGREMMSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCRRLKIMKGSDAIGLAPRAMEKTKSKS* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0731 334 ProSiteProfiles PB1 domain profile. 214 318 IPR000270 GO:0005515
Mal6g0731 334 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 14 327 IPR003311 GO:0005634|GO:0006355
Mal6g0731 334 Gene3D - 211 327 - -
Mal6g0731 334 Pfam AUX/IAA family 56 325 IPR033389 -
Mal6g0731 334 PANTHER AUXIN-RESPONSIVE PROTEIN IAA8 14 327 - -
Mal6g0731 334 SUPERFAMILY CAD & PB1 domains 212 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0731 Mal-Chr6 10782422 10785826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0731 213 319 B3 DNA Binding Superfamily AT5G37020 31.776 9.97e-08 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Mal6g0731 AUX_IAA 2.1e-90 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0731 K14484 - gmx:547502 525.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g0731 6 10782422 10785826 Mal5g2705 5 79569796 79573644 PCT