Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0701 ATGGCAACATTAGAATCAACGATAACTGTATTCGCATCACAACGTTTTCCAAACAATTATTACTATTTCCTAGCAAAATCACCTGATTCCGTTAAACTCCATGCTTCCACTTCAATTCATTCTTTTTCTTTTTCCATTTTCTCTCACAACAACCACAAACTTCACTTTTCTTCTTCCAGATCCAAAACACTCTGTTTTGCTTTACAAGAGGTAACAGAAGCAGCAACAATTGAAGGGGAGGAAAAAATAGAGACATTGAACAATGATAAGAAGAAGCTCGCTGTCTTCAACTTACCTTGGTCTTTGTCTGCGCCAGATATTAAGGACTTGTTCGCTCAATGTGGAACTGTAATTGGCGTTGAGATTATAGAGAGCAAAGATGGAAAGGGAAAAGGTTATGCATTTGTTACTATGGATTCAGGAGAAGAGGCCCAGGCTGCTGTTGATCAATTTGACGCTACTGAAATCTCAGGCCAAATAATAAGGGTAGAGTTTGCAAAGAGATTCAAGAAACCTCCTAGCAAGGCACGTCATGTAATCTATGCATCCAACCTTGCATGGAAAGCAAGATCTAAACATCTTAGAGACATCTTCACTGAGAATTTCAAAACACCAGTTTCAGCCAGGGTTGTCTTTGAAAGGCCTGCTGGGAGATCTCCTGGTTATGGATTTGTTTCTTATCATACGAAGGAGGAAGCAGAAGCTGCCATTTCTGCTTTGCAAGGGAAGGAGTTAATGGGACGACCACTTCTCGTAGAAATAAGTGAAAAGAAAGTTAAAGAAGCTGAAAGTGTAGAAGGTGAAGTTATAGAAGCTGAAAGTGAAGAAAATGAAGAGCAAGATGAAAACGCTCAACCGGAAGAGTCATAA 870 0.3966 MATLESTITVFASQRFPNNYYYFLAKSPDSVKLHASTSIHSFSFSIFSHNNHKLHFSSSRSKTLCFALQEVTEAATIEGEEKIETLNNDKKKLAVFNLPWSLSAPDIKDLFAQCGTVIGVEIIESKDGKGKGYAFVTMDSGEEAQAAVDQFDATEISGQIIRVEFAKRFKKPPSKARHVIYASNLAWKARSKHLRDIFTENFKTPVSARVVFERPAGRSPGYGFVSYHTKEEAEAAISALQGKELMGRPLLVEISEKKVKEAESVEGEVIEAESEENEEQDENAQPEES* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0701 289 Coils Coil 262 282 - -
Mal6g0701 289 SUPERFAMILY RNA-binding domain, RBD 90 257 IPR035979 GO:0003676
Mal6g0701 289 PANTHER CHLOROPLAST, PUTATIVE-RELATED 16 268 - -
Mal6g0701 289 PANTHER OS02G0815200 PROTEIN 16 268 - -
Mal6g0701 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 178 257 IPR000504 GO:0003723
Mal6g0701 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 180 250 IPR000504 GO:0003723
Mal6g0701 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 161 IPR000504 GO:0003723
Mal6g0701 289 MobiDBLite consensus disorder prediction 268 289 - -
Mal6g0701 289 SMART rrm1_1 179 253 IPR000504 GO:0003723
Mal6g0701 289 SMART rrm1_1 92 164 IPR000504 GO:0003723
Mal6g0701 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 168 IPR000504 GO:0003723
Mal6g0701 289 Gene3D - 177 288 IPR012677 -
Mal6g0701 289 Gene3D - 69 176 IPR012677 -
Mal6g0701 289 MobiDBLite consensus disorder prediction 259 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0701 Mal-Chr6 10094114 10099092 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0701 80 258 Eukaryotic Initiation Factors Gene Family AT4G34110 30.612 1.07e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0701 - - gmx:100792275 278.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g0701 6 10094114 10099092 Mal6g0701 6 10094114 10099092 ECH