Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0700 ATGGCTTCTCTTGGAAATCCAAAAGCTTGGGTTCCATATATGAACAGCAAAGATTGTTCTCAAGGTTTTTGTAGTGTCTATTGTCCACAATGGTGCTATGCAATCTACCCTCCACCTCCTCCTTCTCCCTTTGAATTCCCTGATGATGATTCAAGTCCAAATTTCTCTCCTCTTGTTATTGCAATCATTGGAATCTTAGCAAGTGCTTTTCTTCTTGTTACTTACTACACCATAATCTCCAAATACTGCGGCCAAAGAGGATCATCATTAAGCGAATCACACGAAACAAACGATGAATTAGAAGACAATCATCATCATAACCCTTCAATCCATGAGCCATGGCATGTTTCAACAAATGGATTAGATGAAACATTGATTAAATCCATAACAGTTTGCAAATACAAAAAGAACGATGGATTGGTTGATGTAACAGATTGTTCTGTTTGTCTAAATGAGTTTCAAGATGATGAAAGTATTAGACTTTTACCTAAATGTAGCCATGCTTTTCATCTTCCTTGTATTGATACATGGCTCAAATCTCATTCTAATTGTCCTCTTTGTCGCGCTACCATATTCGCGTTCAATGCTTCAAGCTCAAGTGCTGCAACACTTCATGTGCCAGCTCCAATTATAGAAAATCCTTCAAGGAATGAAGTTTCTTTAGAAACTCAACATTTGAATGAAATTGTAGATGTTGAAAGAGAAAATGAATTTGATGTGGTGGAAGAAAGTCCTATTCCGAAGACTGAATTCCGCGCTTTAAGCGATTTAGGAAATTTAAGAGGAAGGCATAGTGTGATTGAGATTAGAGATAATGAAGCTTATCATGAATCGATTCGAAGATCGGTTTCTATGGATCATTCATTTCAAAGTGGTGTTTTAGTTGTTGATGATGTTAGTGTTATGCATATGAATCAAGAACAAGATTCTTCTCAAGGTGAAGGTTCATCAAAGAGATTAAGAGGTGAAAGTGAAAGTAGTAAATGTAGTTATAGAAACAAGGTTTTGCATTGTGTTTTAAGTCCAATTGCAATGAAGAGATCATTATCAAGTGGAAGATTTTTCCTTAGCAGAAGTTGCAGAGGAAGGCTTGGAGTTTTGCCTGTCTAA 1110 0.364 MASLGNPKAWVPYMNSKDCSQGFCSVYCPQWCYAIYPPPPPSPFEFPDDDSSPNFSPLVIAIIGILASAFLLVTYYTIISKYCGQRGSSLSESHETNDELEDNHHHNPSIHEPWHVSTNGLDETLIKSITVCKYKKNDGLVDVTDCSVCLNEFQDDESIRLLPKCSHAFHLPCIDTWLKSHSNCPLCRATIFAFNASSSSAATLHVPAPIIENPSRNEVSLETQHLNEIVDVERENEFDVVEESPIPKTEFRALSDLGNLRGRHSVIEIRDNEAYHESIRRSVSMDHSFQSGVLVVDDVSVMHMNQEQDSSQGEGSSKRLRGESESSKCSYRNKVLHCVLSPIAMKRSLSSGRFFLSRSCRGRLGVLPV* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0700 369 MobiDBLite consensus disorder prediction 93 112 - -
Mal6g0700 369 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 1 360 - -
Mal6g0700 369 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 360 IPR044675 -
Mal6g0700 369 MobiDBLite consensus disorder prediction 93 111 - -
Mal6g0700 369 SMART ring_2 146 187 IPR001841 -
Mal6g0700 369 MobiDBLite consensus disorder prediction 305 325 - -
Mal6g0700 369 CDD RING-H2_PA-TM-RING 145 188 - -
Mal6g0700 369 SUPERFAMILY RING/U-box 126 193 - -
Mal6g0700 369 Pfam Ring finger domain 145 188 IPR001841 -
Mal6g0700 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 195 IPR013083 -
Mal6g0700 369 ProSiteProfiles Zinc finger RING-type profile. 146 188 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0700 Mal-Chr6 10088054 10089163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0700 6 369 C3H Transcription Factor Family AT5G17600 43.236 6.07e-72 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0700 - - gmx:100792267 473.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g0700 6 10088054 10089163 Mal6g0700 6 10088054 10089163 ECH
Mal6g0700 6 10088054 10089163 Mal5g2754 5 81883694 81884761 PCT