Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0682 ATGAGTTTTCAGGACTTACAATCCGGCCGTCGCAACCTAATCAACGGCAAACAAGACCCCACGCAAGCGGTGGCTTCCGGCGTGTTTCAGATCAACACCGCCGTCTCCACTTTTCAAAGACTCGTTAACACCCTCGGAACCCCCAAAGACACGCCAGAACTCCGCGAGAAACTGCACAAGACGAGACTTCATATTGGACAATTGGTGAAGGATACTTCCGATAAACTTAAACAAGCTAGTGAAATTGATCATCATGCTGATGTTAATGCAACCAAGAAGATAGCAGATGCTAAATTGGCGAAAGATTTTCAGGCAGTGTTGAAAGAATTTCAGAAGGCACAGCATCTTGCAGCTGAGAGGGAGACAGCTTACAATCCTTTTGTTCCGCATGAAGTTCAGCCATCCAGCTATACAGGCAGCGAAGTAGGTGTTAGTTCCGATAAAAGTCAAGAACAGCATGCCCTTCTTTTGGAATCCAGAAGACAGGAGGTAATATCCTTAGATAATGAAATTTCCTTCAATGAGGCTATCATTGAGGAAAGAGAACAAGGCATTCAAGAAATCCATCAGCAGATAGGTGAAGTAAATGAGATCTTCAAAGATCTTGCTGTGCTTGTTCAGGAGCAAGGAGCAATGATTGATGATATTGGGACCAACATTGAGAATTCTCATGAAGCCACTACCCAAGCAAAATCGCAACTTGCTCAAGCTTCAAAGACACAAAGATCAAATTCATCTTTGGCGTGCTTGCTTTTGGTGATATTTGGAGTTGTGCTTCTCATCATCATCATTGTTGTTGCTGCTTAG 807 0.4349 MSFQDLQSGRRNLINGKQDPTQAVASGVFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSDKLKQASEIDHHADVNATKKIADAKLAKDFQAVLKEFQKAQHLAAERETAYNPFVPHEVQPSSYTGSEVGVSSDKSQEQHALLLESRRQEVISLDNEISFNEAIIEEREQGIQEIHQQIGEVNEIFKDLAVLVQEQGAMIDDIGTNIENSHEATTQAKSQLAQASKTQRSNSSLACLLLVIFGVVLLIIIIVVAA* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0682 268 Pfam Syntaxin-like protein 25 125 IPR006011 GO:0016020
Mal6g0682 268 SUPERFAMILY t-snare proteins 17 230 IPR010989 GO:0016020|GO:0016192
Mal6g0682 268 SMART tSNARE_6 170 237 IPR000727 -
Mal6g0682 268 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 175 237 IPR000727 -
Mal6g0682 268 PANTHER SYNTAXIN 8 267 IPR045242 -
Mal6g0682 268 Gene3D - 170 268 - -
Mal6g0682 268 PANTHER SYNTAXIN OF PLANTS PROTEIN 8 267 - -
Mal6g0682 268 Gene3D - 15 128 - -
Mal6g0682 268 SMART SynN_4 8 122 IPR006011 GO:0016020
Mal6g0682 268 ProSitePatterns Syntaxin / epimorphin family signature. 181 220 IPR006012 GO:0005484|GO:0006886|GO:0016020
Mal6g0682 268 CDD SNARE_Qa 178 236 - -
Mal6g0682 268 Pfam SNARE domain 212 263 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0682 Mal-Chr6 9689134 9692434 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0682 1 256 SNARE and Associated Proteins AT5G46860 76.923 9.02e-143 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0682 - K08488 gmx:547656 393.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g0682 6 9689134 9692434 Mal6g0682 6 9689134 9692434 ECH
Mal6g0682 6 9689134 9692434 Mal5g2786 5 82784508 82788635 PCT