Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0620 ATGGCTCGCAAAAACGACGCCGTTTTAGCCACCGAAGAAGAAGAACAAACCCATAACAACAACAACACCGAACTCAAATCCTCAAAGAAGAAAAACAAAAAGAACAAAACCAAACACGAAGAAAACACTCCCAAAAGAAAACACGAAAACGACGAAACCAATCTTCAAAACGACGCCGAATCAGAGAAGAAAAGTAAGAAGAAAAAAAAACACAACAAATCGGAGGAAATCAACAACACTGGTAACGGAGATGTGTCGGTTTCGGCGACGGATGAACCGATTATGGTTACAGGAAATAATGCTGGAGACGAGAAATACGCGGCGTTTAAGACGTTTGAGGATTCGAAGCTTCCTGAGAATGTGCTTGAGTGTTGTAAGGGTTTTGAGAAACCTTCTCCGATTCAATCACGTGCTTGGCCGTTTTTGTTGGATGGTCGTGATTTGATTGGAATTGCGGCTACTGGGTCAGGTAAGACACTTGCTTTTGGAATACCAGCTGTTATGCATGTTATGAATAAGCGGAAGAGTAAGGTTTCTTCCAAGGGTCGGAATCCTCTTTGCCTTATGCTCTCTCCTACAAGGGAGCTAGCTCAACAAATATCAGATGTATTGTGTGATGCTGGTAAATCTTGTGGCGTGGAATCAATTTGTTTGTATGGTGGAACCTCCAAAGGACCACAAATCTCTGCACTAAAATCTGGCATTGATATTGTCATTGGAACCCCTGGTCGTATTCAAGATCTAGTTGAAATGGGTATCTGTCGTCTACAAGAAGTATCTTTTGTGGTCCTTGATGAAGCAGATCGGATGCTTGACATGGGTTTTGAACAAATAGTCCGCTCTATACTTGGTCAGACATGTTCTGCTCGTCAAATGGTTATGTTCAGTGCTACATGGCCGCTAGCAGTTCATCACTTAGCTCAGGAATTTATGGATCCCAACCCTGTAAAAGTTGTTGTAGGCTCAGAGGATTTAGCTGCCAATCATGATGTCATGCAGATAGTTGAGGTATTGGATGAGCGTTTACGTGATAAGCGCCTGCTTGCTTTACTAGAAAAATACCACAAATCTCAAAAGAATCGAGTATTGGTTTTTGTTTTGTACAAATGGGAAACCACACGGGTTGAAAAAATGCTTCAACAAGGGGGTTGGAAGGCGGTGTCAATAAGTGGTGATAAATCACAGCATGAGCGCACAAAGGCACTATCATTATTCAAGAATGGAAGCTGTCCTTTGATGATTGCTACTGATGTGGCTGCACGAGGATTGGATATTCCAGATGTAGAAGTAGTGATCAACTTTAGTTTTCCTCTAACTTTAGAAGATTATGTTCATAGAATTGGGCGGACTGGACGAGCTGGTAAGAAAGGTGTTGCCCATACATTTTTCACACATGCGAATAAGGGACTTGCTGGGGAGCTTGTGAATGTTTTAAGGGAAGCAGGACAAGTTGTGCCAGACGATCTTTTGAAATTTGGCACACATGTTAAGAAAAAGGAGTCTAAGCTTTATGGGGCTCACTTCAAGGAAATTCCTGTTGATGCTCCAAAGTCTAAGAAAATAACATTTGACAACTCTGATGATGAAGACTAA 1593 0.4181 MARKNDAVLATEEEEQTHNNNNTELKSSKKKNKKNKTKHEENTPKRKHENDETNLQNDAESEKKSKKKKKHNKSEEINNTGNGDVSVSATDEPIMVTGNNAGDEKYAAFKTFEDSKLPENVLECCKGFEKPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGIPAVMHVMNKRKSKVSSKGRNPLCLMLSPTRELAQQISDVLCDAGKSCGVESICLYGGTSKGPQISALKSGIDIVIGTPGRIQDLVEMGICRLQEVSFVVLDEADRMLDMGFEQIVRSILGQTCSARQMVMFSATWPLAVHHLAQEFMDPNPVKVVVGSEDLAANHDVMQIVEVLDERLRDKRLLALLEKYHKSQKNRVLVFVLYKWETTRVEKMLQQGGWKAVSISGDKSQHERTKALSLFKNGSCPLMIATDVAARGLDIPDVEVVINFSFPLTLEDYVHRIGRTGRAGKKGVAHTFFTHANKGLAGELVNVLREAGQVVPDDLLKFGTHVKKKESKLYGAHFKEIPVDAPKSKKITFDNSDDED* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0620 530 CDD DEADc 126 318 - -
Mal6g0620 530 Gene3D - 8 320 IPR027417 -
Mal6g0620 530 CDD SF2_C_DEAD 331 463 - -
Mal6g0620 530 Coils Coil 45 65 - -
Mal6g0620 530 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 139 317 IPR014001 -
Mal6g0620 530 PANTHER BNAA08G07020D PROTEIN 26 516 - -
Mal6g0620 530 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 467 IPR027417 -
Mal6g0620 530 SMART ultradead3 127 334 IPR014001 -
Mal6g0620 530 MobiDBLite consensus disorder prediction 1 28 - -
Mal6g0620 530 SMART helicmild6 373 454 IPR001650 -
Mal6g0620 530 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 263 271 IPR000629 -
Mal6g0620 530 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 110 136 IPR014014 GO:0003724
Mal6g0620 530 MobiDBLite consensus disorder prediction 1 90 - -
Mal6g0620 530 Gene3D - 321 496 IPR027417 -
Mal6g0620 530 Pfam DEAD/DEAH box helicase 133 302 IPR011545 GO:0003676|GO:0005524
Mal6g0620 530 MobiDBLite consensus disorder prediction 37 65 - -
Mal6g0620 530 Pfam Helicase conserved C-terminal domain 346 454 IPR001650 -
Mal6g0620 530 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 26 516 - -
Mal6g0620 530 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 330 493 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0620 Mal-Chr6 8555165 8560374 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0620 111 462 Eukaryotic Initiation Factors Gene Family AT3G19760 33.616 5.06e-54 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0620 K14811 - gmx:100305353 796.193