Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0583 ATGGCTGTAAATCTCACACAAGGTGCGATATTGGCGATGTGTTTCACATCGGAAGATTTGAATCCGGTGTTACAAGTTATCGATTTGAAGCTTGTTCAGCAACAGAATAGCGCTAATGAGAGGTACCGACTCGTTCTCTCCGATGGTTCGTATTATCAACAAGGAATGCTCGCTACTCAGAAGAATGAATTGGTTCATTCTGGAAGATTGCAGAAAGGTTCCATTGTGAAGCTTTCTCAGTACATTTGTAACGTTGTTCAGAATCGCAAAATTATCATCATTGTTGAGCTGGATGTTATAGTGGACAAATGTGAGTTGATTGGACAACCTGTTGCGGCACCAAAAGAAGCACCTGCACAATCTGCCGTGAGTCATGTAGGAAATGTACAATCAGCTGCTGGAAATTCACAGTATTTGAACAGTAGTTCCCATCCAGGTGGCGTTAATGTTAGACCAAATGTACCTGTGCCATCCATGGAGCGTCCGAATGTGAATCCTCCAGCTAGCAGTGTTTATTCTAACAACTCTGGATCTGCAAGATATGGAGCATCTAATGCCCCTCCATCTTATTCTAAACCTGAGCCTGGAGTCGGTTTGAATAGACCAGCGTCAGTCAATGGGTCTTATGGTGAACAGAATACAAGTTTCCGCAATCCACAATATGAGGCTTCAAGACCAGTGCAAAATTCTTATGTTCGCCCTCCTCAGCCTATGCACCGACAACCATCTCCTCTGTACACCAACAGAGGGCCTTCAGGAAGAAATGATGCTGCCCCAAGGATAATTCCGATAACTGCATTGAATCCATATCAGAGTATGTGGACAATTAAAGCCAGAGTAACAGCTAAGGGAGAACTTAGGCTCTACAACAATGCCCGTGGTGAGGGAAAAGTATTTTCTTTTGATCTTTTGGATTCAGATGGTGGAGAAATACGGGCAACTTGCTTTAATGCTGTGGCTGATCAGTTCTATAATGTAATTGAAGTTGGTAAAGTCTATCTTGTTTCAAGGGGAAGCATCAAGCCAGCTCAGAAGAATTTTAATCACCTTAATAATGATCAAGAGATAACCCTTGATATGACATCAGTTATACAGCCATGTCTTGACGATGATAACTCAATTCCACAGCAGATATACAATTTCCGATCCATTGGTGACATTGAAAATATGGAAAACAACAGCATTGTGGATGTGATTGCTGTGGTTACTTCTATCAGTCCTACAGCTTCAATCATGAGAAAAAATGGTACTGAAACACAGAAGAGATCTCTCCAGTTGAAAGACATGTCTGGCCGTAGTGTTGAATTAACTGTATGGGGGAATTTTTGCAATACCGAAGGACAAAGGCTGCAAAATATTTGTGACTCTGGGTCATTTCCAATTTTGGTTGTAAAATCTGCCCGAGTAAATGATTTCAATGGAAAGTCTGTTGGGACCATAGCCACCAGCCAATTATTGGTAGAACCTGATACTCCAGAGACTTCTAAACTGAGAGAATGGTTTGACAAGGAAGGGAGGAACGTCCCAAGTCAATCTATTTCCAAAGATTCATCTAGTTTTGGAAAAAGTGAAGTGCGGAAGACTATATCTCAAATTAAAGATGAAAATTTAGGGACTTCCGAGAAGCCTGATTGGATATCCATCTGTGCAAGTGTTTCATTTGTTAAAGTCGATAATTTTTGCTACACTGCTTGTCCTATCATGATAGGAGATAGGCAATGTAACAAAAAGGTTACCAACAATGGAGATGGGAAATGGCACTGCGAAAGGTGTAATAAGTCTGTTGATGCTTGTGATTATAGGTACTTGCTGCAAATGCAGATACAGGATCACACTGGTGTAACATGGGTTACTGCTTTTCAGGAGGGTGGCGAGGACATCATGGGTATGCCGGCAAAAGATTTGCATTTTCTGAAATTTGAAGAACAAGATGAAGAAAAAGTTGCAGAAATCATCCGTAAGGTTCTCTTCACTAAATATATGTTCAAGTTAAAAGTAAAAGAGGAGACATTTAATGACGAATCCCGTGTTAAGTCAACTCTACTAAAAGCAGAGAAGGTTAACTTTGCATCTGAAACAAGATCTCTTCTGGATTTGATCGATAAACTTAAGTCTGCGAAAGCAGAAGGTACCCCTATTAACTCTGTGATCAATAAGACTGGAATGGGGAGCCTTGAAACTGGACAAGCTATGCTGCCAGTATATACTCCTACAATGAGCAACACTAATACTGGTAGAGAATATGGCCCCCCAGCAAATCAAGTTGGTCAGTATGGAAACCAAAATAGCAGTTCTTTTGCTTCCTCAGGGGCTCCTGGTTCATACATGTCATGTACCAGCTGTGGAATCTCTGGTCATAACTCTGCACAATGCCTAAATCTTAGAAATCAACCTGAACAGTCTGCTGGAGGGGCCTACGCCAACAGGGTATCTGGTGGATCAGGAGGTGTATCAGGTAATTGTTATAAATGTCAACAACCTGGACATTGGGCGAGCAACTGCCCTAGTATGAGTGCAGCCAACAGGGTATCTGGTGGATCGGGTGGTGCTTCAGGTAACTGCTATAAATGTCAACAACCTGGACATTGGGCGAGCAACTGTCCTGGTATGAGTGCAGCACCTCAATCTTATGGAAACAGTAATGCAGGGCAAGGAAGATCTGGTATTGCTCAAAATCAGCAGTATGGGCGATATTGA 2697 0.4194 MAVNLTQGAILAMCFTSEDLNPVLQVIDLKLVQQQNSANERYRLVLSDGSYYQQGMLATQKNELVHSGRLQKGSIVKLSQYICNVVQNRKIIIIVELDVIVDKCELIGQPVAAPKEAPAQSAVSHVGNVQSAAGNSQYLNSSSHPGGVNVRPNVPVPSMERPNVNPPASSVYSNNSGSARYGASNAPPSYSKPEPGVGLNRPASVNGSYGEQNTSFRNPQYEASRPVQNSYVRPPQPMHRQPSPLYTNRGPSGRNDAAPRIIPITALNPYQSMWTIKARVTAKGELRLYNNARGEGKVFSFDLLDSDGGEIRATCFNAVADQFYNVIEVGKVYLVSRGSIKPAQKNFNHLNNDQEITLDMTSVIQPCLDDDNSIPQQIYNFRSIGDIENMENNSIVDVIAVVTSISPTASIMRKNGTETQKRSLQLKDMSGRSVELTVWGNFCNTEGQRLQNICDSGSFPILVVKSARVNDFNGKSVGTIATSQLLVEPDTPETSKLREWFDKEGRNVPSQSISKDSSSFGKSEVRKTISQIKDENLGTSEKPDWISICASVSFVKVDNFCYTACPIMIGDRQCNKKVTNNGDGKWHCERCNKSVDACDYRYLLQMQIQDHTGVTWVTAFQEGGEDIMGMPAKDLHFLKFEEQDEEKVAEIIRKVLFTKYMFKLKVKEETFNDESRVKSTLLKAEKVNFASETRSLLDLIDKLKSAKAEGTPINSVINKTGMGSLETGQAMLPVYTPTMSNTNTGREYGPPANQVGQYGNQNSSSFASSGAPGSYMSCTSCGISGHNSAQCLNLRNQPEQSAGGAYANRVSGGSGGVSGNCYKCQQPGHWASNCPSMSAANRVSGGSGGASGNCYKCQQPGHWASNCPGMSAAPQSYGNSNAGQGRSGIAQNQQYGRY* 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0583 898 Pfam OB-fold nucleic acid binding domain 274 358 IPR004365 GO:0003676
Mal6g0583 898 PANTHER REPLICATION PROTEIN A SUBUNIT 3 743 - -
Mal6g0583 898 Pfam Zinc knuckle 853 868 IPR001878 GO:0003676|GO:0008270
Mal6g0583 898 Pfam Zinc knuckle 820 836 IPR001878 GO:0003676|GO:0008270
Mal6g0583 898 CDD RPA1_DBD_C 529 702 IPR013955 -
Mal6g0583 898 Gene3D - 260 370 IPR012340 -
Mal6g0583 898 Pfam Replication factor-A protein 1, N-terminal domain 5 101 IPR007199 GO:0003677|GO:0005634|GO:0006260
Mal6g0583 898 MobiDBLite consensus disorder prediction 878 898 - -
Mal6g0583 898 SUPERFAMILY Nucleic acid-binding proteins 1 108 IPR012340 -
Mal6g0583 898 Pfam Replication factor-A C terminal domain 545 696 IPR013955 -
Mal6g0583 898 Gene3D - 774 846 - -
Mal6g0583 898 SMART c2hcfinal6 853 869 IPR001878 GO:0003676|GO:0008270
Mal6g0583 898 SMART c2hcfinal6 820 836 IPR001878 GO:0003676|GO:0008270
Mal6g0583 898 SMART c2hcfinal6 777 793 IPR001878 GO:0003676|GO:0008270
Mal6g0583 898 ProSiteProfiles Zinc finger CCHC-type profile. 821 836 IPR001878 GO:0003676|GO:0008270
Mal6g0583 898 CDD RPA1N 8 101 IPR007199 GO:0003677|GO:0005634|GO:0006260
Mal6g0583 898 MobiDBLite consensus disorder prediction 163 185 - -
Mal6g0583 898 SUPERFAMILY Nucleic acid-binding proteins 379 508 IPR012340 -
Mal6g0583 898 SUPERFAMILY Retrovirus zinc finger-like domains 818 870 IPR036875 GO:0003676|GO:0008270
Mal6g0583 898 Gene3D - 373 511 IPR012340 -
Mal6g0583 898 Gene3D - 512 703 IPR012340 -
Mal6g0583 898 MobiDBLite consensus disorder prediction 135 256 - -
Mal6g0583 898 ProSiteProfiles Zinc finger CCHC-type profile. 854 868 IPR001878 GO:0003676|GO:0008270
Mal6g0583 898 PANTHER REPLICATION FACTOR A 1, RFA1 3 743 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal6g0583 898 CDD RPA1_DBD_B 395 502 - -
Mal6g0583 898 MobiDBLite consensus disorder prediction 205 250 - -
Mal6g0583 898 Pfam Replication protein A OB domain 384 487 IPR031657 -
Mal6g0583 898 SUPERFAMILY Nucleic acid-binding proteins 526 703 IPR012340 -
Mal6g0583 898 Gene3D - 3 113 IPR012340 -
Mal6g0583 898 Gene3D - 847 894 - -
Mal6g0583 898 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 235 702 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal6g0583 898 SUPERFAMILY Nucleic acid-binding proteins 261 374 IPR012340 -
Mal6g0583 898 CDD RPA1_DBD_A 263 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0583 Mal-Chr6 7665512 7669033 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0583 1 807 Core DNA Replication Machinery Family AT5G45400 52.154 0.0 851
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0583 K07466 - gmx:100778597 1232.62