Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0582 ATGCTGACACAAGGCGCGATAATGACGATGTCTTTCACATCGGAGAAATTGCAACCGGTGTTACAAGTTATCGATTTGAAGCTCATTCAGTCACAACAGAATAGCACTACTGAGAGGTACCGTCTCGTTATTTCCGATGGTTCGTATTATCAACAAGGAATGCTTGCTACTCAGAAGAATGAGTTGGTTCATTCTGGAAGGTTGCAGAAAGGTTCCGTTGTGAAGCTTTCTCAGTTCATTTGTAACGATGTTCAGAATCGCAAAATTATCATCATTGTTGAGCTGGATGTTATACTGGACAAATGTGACTTGATTGGAGAACCTGTTCCAGCACCAAAAGAAGCACATGTACAATCTGCTGTGAGTCATGCAGGAAATGTACAATCAGCTGCTGGTCAATTAGGAAGCACTTCTGGAAATTCACAGTATTTAAACAGTAATTCCCATCCAGGTGGCGTTAATGTTAGACCAAATGTGGCTGTGCCATCTGTGGATCGTCCGACTGTGAATCCTCCAGCTAGCAGTGTTTATTCTAACAGTTCCGGATCTGCAAGATACTCTTCATCTAATGGAGTCAGTTTGAATATCCCAGCGCCAATCAATGGGTCTTATGTTTGCCCTCATCAGCCTATGTACCGACAGCCATCTCCTATGTACAGCAACAGAGGGCCTACAGGAAGGAATGATGCTCCCCCAAGGATAATTCCAATATCTGCATTGAATCCATATGAGAATATGTGGACAATTAAAGCCAGAGTAACGGCTAAGGGAGAGCTTAGGCTCTATAACAATGCCCGAGGTGAGGGAAAAGTATTTTCCTTTGATCTTTTGGATTCAGATGGTGGAGAAATACGGGCAACTTGCTTTAATGCTGTGGCTGATAAGTTCTATAATGTAATAGAAGTTGGTAAAGTCTATCTTGTTTCCAAGGCATATGTGAAGCCAGCTCAGAAGAATATTAATCACCTTCCTAATGATCAAGAGATAACCCTTGATATGACATCAGTTATACAGCCATGTCTTGACGATGATAACTCAATTCCACAGCAGATATACAATTTCCGTTCCATTGGTGACATTGAAAATATGGAAAACAACAGCATTGTGGATGTGATTGCTGTGGTTACTTCTATCAGTCCTACAGCTTCAATCATGAGAAAAAATGGTACTGAAACACAGAAGAGATCTCTCCAGTTGAAAGACATGTCTGGCCGAAGTGTTGAATTAACTGTATGGGGGAATTTTTGCAATACCGAAGGACAAAGGCTGCAAAATATTTGCAACTCTGGGGCATTTCCAATTTTGGTTGTAAAATCTGCCAGAGTAATTGATTTCAATGGGAAGTCTATTGGGACCATTGCCACCAGCCAATTATTGGTAGAACCTGATTTTCCAGAGGCTTTTACACTGAGAGAATGGTTTGACCAGCAAGGGAGGAATGCCCCAAGTCATACTATTTCCAGAGAATCATCTAGTATTGGTATAAGTGAAGTGCGGAAGACTATATCTCAAATTAAAGATGAAAAGTTAGGGACTTCAGAGAAGCCGGATTTTATATCTATCTGTGCAAGTGTTTCATTTGTTAAAGTTGATAATTTTTGCTACACAGCTTGTCCTATCATGATAGCAGATAGGAAATGTAACAAAAAGGTTACCAACAACGGTGATGGGAAATGGCGCTGTGAAAGGTGTGATAAGTCCGTTGATGCTTGTGATTATAGGTACTTACTGCAAATGCAGATACAGGATCGCACTGGCGTAGCATGGGTTACTGCTTTTCAGGAGGGTGGCGAGGACATCATGGGTATGCCGGCAAAAGATTTGCATTTTCTGAAATTTGAAGAACGAGATGATGAAAAAGTTGCAGAAATCATCAGTAACGTTATCTTCAGTAAATATGTGTTCAAGTTAAAAGTAAAACAGGAGACATTTAATGACGAAGTGCGTGTTAAGTTAACTCTACTAAAAGCAGAGAAGGTTAACTTTGCATCTGAATCTAGATCTCTTCTGGATTTGATCGATAAACTTAAGTCTGAGAAAGCAGAAGGTGCCCCTATTAACTCTGTGATCAATAAGACTGGAATGGGGAGCCTTGAAACTGGACAAGCTATGCCGCCAGTATATACTCCTATAATGAGCAACACTAATACTGGTAGAGATTATGGCCCCCCAGCAAATCAAGTTGGTCAGTACCGAAACCAATCTAGCAGTTCTTTAGCACCTCAGGATCAGATATTGCAGCGCCTATTTGTTGGATCAGGTAGTGTTTCTGGTGAGTGCTATAGATGCCATCAACCCGGGCATTGGGAGAGAGGACAAAGGCTGCAAAATATTTGTGACTCCGGAGCATTTTCAATTTTGGTTGTAAAATCTGCCAGAGTAAATGATTTCAATGGTAAGTCTGTTGGGACCAATTTTGTTAAGGTTGATAATATTTGCAACACAATTATGCTGATAAGAATAATAGGGGGATTTGGTCTTGGTATTCTCCTTCTGATGGCCTTCTTGTGCTATTGCTAG 2520 0.4079 MLTQGAIMTMSFTSEKLQPVLQVIDLKLIQSQQNSTTERYRLVISDGSYYQQGMLATQKNELVHSGRLQKGSVVKLSQFICNDVQNRKIIIIVELDVILDKCDLIGEPVPAPKEAHVQSAVSHAGNVQSAAGQLGSTSGNSQYLNSNSHPGGVNVRPNVAVPSVDRPTVNPPASSVYSNSSGSARYSSSNGVSLNIPAPINGSYVCPHQPMYRQPSPMYSNRGPTGRNDAPPRIIPISALNPYENMWTIKARVTAKGELRLYNNARGEGKVFSFDLLDSDGGEIRATCFNAVADKFYNVIEVGKVYLVSKAYVKPAQKNINHLPNDQEITLDMTSVIQPCLDDDNSIPQQIYNFRSIGDIENMENNSIVDVIAVVTSISPTASIMRKNGTETQKRSLQLKDMSGRSVELTVWGNFCNTEGQRLQNICNSGAFPILVVKSARVIDFNGKSIGTIATSQLLVEPDFPEAFTLREWFDQQGRNAPSHTISRESSSIGISEVRKTISQIKDEKLGTSEKPDFISICASVSFVKVDNFCYTACPIMIADRKCNKKVTNNGDGKWRCERCDKSVDACDYRYLLQMQIQDRTGVAWVTAFQEGGEDIMGMPAKDLHFLKFEERDDEKVAEIISNVIFSKYVFKLKVKQETFNDEVRVKLTLLKAEKVNFASESRSLLDLIDKLKSEKAEGAPINSVINKTGMGSLETGQAMPPVYTPIMSNTNTGRDYGPPANQVGQYRNQSSSSLAPQDQILQRLFVGSGSVSGECYRCHQPGHWERGQRLQNICDSGAFSILVVKSARVNDFNGKSVGTNFVKVDNICNTIMLIRIIGGFGLGILLLMAFLCYC* 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0582 839 CDD RPA1_DBD_A 236 339 - -
Mal6g0582 839 Pfam Replication factor-A protein 1, N-terminal domain 2 98 IPR007199 GO:0003677|GO:0005634|GO:0006260
Mal6g0582 839 PANTHER REPLICATION PROTEIN A SUBUNIT 772 805 - -
Mal6g0582 839 Pfam OB-fold nucleic acid binding domain 247 331 IPR004365 GO:0003676
Mal6g0582 839 PANTHER REPLICATION PROTEIN A SUBUNIT 2 700 - -
Mal6g0582 839 SUPERFAMILY Nucleic acid-binding proteins 352 481 IPR012340 -
Mal6g0582 839 PANTHER REPLICATION FACTOR A 1, RFA1 772 805 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal6g0582 839 PANTHER REPLICATION FACTOR A 1, RFA1 2 700 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal6g0582 839 Gene3D - 233 343 IPR012340 -
Mal6g0582 839 Gene3D - 346 484 IPR012340 -
Mal6g0582 839 CDD RPA1N 6 98 IPR007199 GO:0003677|GO:0005634|GO:0006260
Mal6g0582 839 Gene3D - 485 676 IPR012340 -
Mal6g0582 839 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 212 675 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal6g0582 839 SUPERFAMILY Nucleic acid-binding proteins 2 106 IPR012340 -
Mal6g0582 839 Gene3D - 1 111 IPR012340 -
Mal6g0582 839 CDD RPA1_DBD_C 502 675 IPR013955 -
Mal6g0582 839 SUPERFAMILY Nucleic acid-binding proteins 233 347 IPR012340 -
Mal6g0582 839 CDD RPA1_DBD_B 368 475 - -
Mal6g0582 839 Pfam Replication factor-A C terminal domain 518 669 IPR013955 -
Mal6g0582 839 Pfam Replication protein A OB domain 357 460 IPR031657 -
Mal6g0582 839 SUPERFAMILY Nucleic acid-binding proteins 499 676 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0582 Mal-Chr6 7650973 7654210 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0582 772 804 Core DNA Replication Machinery Family AT5G45400 57.576 2.25e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0582 K07466 - gmx:100778597 985.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g0582 6 7650973 7654210 Mal6g0582 6 7650973 7654210 ECH