Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0580 ATGTACCGACAGCCATCTCCTGCGTACAGCAACAAAGGGCCTATAGGAAGAAATGATGCTTCCTCAAGGATAATTCCAATATCTGCATTGAATCCATATGAGAATGTGTGGACAATTAAAGCCAGAGTAACGGCTAAGGGAGAACTTAGGCTCTATAACAATGCCCGTGGTGAGGGAAAAGTATTTTCTTTTGATCTTTTGGATTTAGATGGTGGAGAAATACGGGCAACTTGCTTTAATGGTGTGGCTGATCAGTTCTATAATGTAATTGAAGTTGGTAAAGTCTATCTTGTTTCAAGGGGAAGTGTGAAGCCAGCTCAGAAGAATTTTAATCACCTTGATATGACATCAGTTATACAGCCATGTCTTGACGATGATAACTCAATTCCACAGCAGATATACAATTTCCGTCCCATTGGTGACATTGAAAGTATGGAAAACAACAGCATTGTGGATGCGATTGCTGTGGTTACTTCTATCAGTACTACAGCTTCAATCATGACAATATATTGCACTGAAACACAGAAGAAATCTCTCCGGTTGAAAGACATGTCTGGCCGAAGTGTTGAATTAAATGTCTGGGGGAATTTTTGCAATACCGAAGGACAAAAGCTGGAAAATATTTGCGACTCTGGGGCATTTCCAATTTTGGTTGTAAAATCTGCCAGAGGAAATGATTTCAATGGGAAGTCTATTGGGACCATTGCCACCAGCCAATTATTGGTAGAACCTGATTTTCCAGAGGCTTTTACACTGAGAGAATGGTTTGACCAGCAAGGGAGGAATGCCCCAAGTCAATCTATTTCCAGAGAATCATCTAGTATTGGTAAAAGTGAAGTGCGGAAGACTATATCTCAAATTAAAGATGAAAAGCTAGGGACTTCAGAGAAGCCAGATTTTATATCTATATGTGCAAGTGTTTCATTTGTTAAAGTTGATTTTTTTTGCTACACAGCTTGTCCTATCATGATAGCAGATAGGAAATGTAACAAAATGGTTGCCAACAACGGAGATGGGAAATGGCGTTGTGAAAGGTGTGATAAGTTCGTTGATGCTTGTGATTATAGGTACTTACTGCAAATGCATATACAGGATCACACTGGCGTAACATGGGTTACTGCTTTTCAGGAGGGTGGCGAGGACATCATGGGTATGTCAGCAAAAGATTTGCATTTTCTGAAAGATTTGCACTTTGTTAAATTGTTATTGGACTTATATACAAGTATACATGACTCTAAACTGACATCGTATTTGCTTCCAAAGGAGGAGGACGAAACCTCTATCTAA 1287 0.3947 MYRQPSPAYSNKGPIGRNDASSRIIPISALNPYENVWTIKARVTAKGELRLYNNARGEGKVFSFDLLDLDGGEIRATCFNGVADQFYNVIEVGKVYLVSRGSVKPAQKNFNHLDMTSVIQPCLDDDNSIPQQIYNFRPIGDIESMENNSIVDAIAVVTSISTTASIMTIYCTETQKKSLRLKDMSGRSVELNVWGNFCNTEGQKLENICDSGAFPILVVKSARGNDFNGKSIGTIATSQLLVEPDFPEAFTLREWFDQQGRNAPSQSISRESSSIGKSEVRKTISQIKDEKLGTSEKPDFISICASVSFVKVDFFCYTACPIMIADRKCNKMVANNGDGKWRCERCDKFVDACDYRYLLQMHIQDHTGVTWVTAFQEGGEDIMGMSAKDLHFLKDLHFVKLLLDLYTSIHDSKLTSYLLPKEEDETSI* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0580 428 Gene3D - 127 266 IPR012340 -
Mal6g0580 428 Gene3D - 267 415 IPR012340 -
Mal6g0580 428 CDD RPA1_DBD_C 284 395 IPR013955 -
Mal6g0580 428 CDD RPA1_DBD_A 26 129 - -
Mal6g0580 428 Gene3D - 23 125 IPR012340 -
Mal6g0580 428 Pfam Replication factor-A C terminal domain 300 395 IPR013955 -
Mal6g0580 428 SUPERFAMILY Nucleic acid-binding proteins 281 394 IPR012340 -
Mal6g0580 428 CDD RPA1_DBD_B 150 257 - -
Mal6g0580 428 SUPERFAMILY Nucleic acid-binding proteins 24 128 IPR012340 -
Mal6g0580 428 PANTHER REPLICATION PROTEIN A SUBUNIT 5 394 - -
Mal6g0580 428 PANTHER REPLICATION FACTOR A 1, RFA1 5 394 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal6g0580 428 Pfam Replication protein A OB domain 139 242 IPR031657 -
Mal6g0580 428 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 10 395 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal6g0580 428 Pfam OB-fold nucleic acid binding domain 37 109 IPR004365 GO:0003676
Mal6g0580 428 SUPERFAMILY Nucleic acid-binding proteins 134 263 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0580 Mal-Chr6 7628012 7629298 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0580 4 394 Core DNA Replication Machinery Family AT5G45400 63.910 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0580 K07466 - vvi:100263039 604.364