Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0579 ATGGCTTTGAATCTCACACAAGGTGCGATAATGAAGATGTGTTTCACATCGGAGTATTTGCAACCGGTGTTACAAGTTATCGATTTGAAGCTTGTTCAGTCGCAACAGAATAGCACTATTGAGAGGTACCTTATCGTTCTTTCCGATGGTTCATATTATCAACAAGGAATGCTCGCTACTCAGAAGAATGAATTGGTTCATTCTGGAAGGTTGCAGAAAGGTTCCGTTGTTAAGCTTTCTCAGTTCATTTGTAACGATGTTCAGAATCGCAAAATTATCATGGTTGTTGAGCTGGATATACTGGACAAATGGGACTTGATTGGAGAACCTGTCCCGACACCAAAAGAAGCACATGCACAACCTTGTGTGAGTCATGCCGGAAATGTACAATCAGCTGCTGGTCAATTAGGAAGCACAACTGGAAATTCACAGTACTTGAACAGTAGTTCCCATGCAGGTGGCGTTAATGCTAGACCAAATGTAGCTGTGCCATCCATGGATCGTCCGAATGTAAATCTGACACAAGGTGCGATAATGACGATGTGTTTCACATCGGAGTATTTGCAACCGGTGTTACAAGTTATCGATTTGAAGCTTGTTCAGTCGCAACATAATAGCACTACTGAGATGTACCGTCTCGTTCTTTCCGATGGTTCATATTATCAACAAGGAATGCTCGCTACTCAGAAGAATGAATTGGTTCATTCTGGAAGGTTGCAGAAAGGTTCTGTTGTTAAGCTTTCTCAGTTCATTTGTAACGATGTTCAGAATCGCAAAATTATCATCATTGTTGAGCTGGATGTTGTAGTGGACAAATGTGACTTGATTGGAGAACCTGTCCCAGCACAATGTTTTTTTATATTAGTATGA 870 0.4103 MALNLTQGAIMKMCFTSEYLQPVLQVIDLKLVQSQQNSTIERYLIVLSDGSYYQQGMLATQKNELVHSGRLQKGSVVKLSQFICNDVQNRKIIMVVELDILDKWDLIGEPVPTPKEAHAQPCVSHAGNVQSAAGQLGSTTGNSQYLNSSSHAGGVNARPNVAVPSMDRPNVNLTQGAIMTMCFTSEYLQPVLQVIDLKLVQSQHNSTTEMYRLVLSDGSYYQQGMLATQKNELVHSGRLQKGSVVKLSQFICNDVQNRKIIIIVELDVVVDKCDLIGEPVPAQCFFILV* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0579 289 SUPERFAMILY Nucleic acid-binding proteins 1 108 IPR012340 -
Mal6g0579 289 Gene3D - 4 114 IPR012340 -
Mal6g0579 289 Gene3D - 171 283 IPR012340 -
Mal6g0579 289 CDD RPA1N 177 270 IPR007199 GO:0003677|GO:0005634|GO:0006260
Mal6g0579 289 CDD RPA1N 9 101 IPR007199 GO:0003677|GO:0005634|GO:0006260
Mal6g0579 289 PANTHER REPLICATION FACTOR A 1, RFA1 170 272 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal6g0579 289 PANTHER REPLICATION FACTOR A 1, RFA1 3 143 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal6g0579 289 Pfam Replication factor-A protein 1, N-terminal domain 5 101 IPR007199 GO:0003677|GO:0005634|GO:0006260
Mal6g0579 289 Pfam Replication factor-A protein 1, N-terminal domain 173 270 IPR007199 GO:0003677|GO:0005634|GO:0006260
Mal6g0579 289 PANTHER REPLICATION PROTEIN A SUBUNIT 170 272 - -
Mal6g0579 289 PANTHER REPLICATION PROTEIN A SUBUNIT 3 143 - -
Mal6g0579 289 SUPERFAMILY Nucleic acid-binding proteins 171 277 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0579 Mal-Chr6 7624986 7627459 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0579 171 282 Core DNA Replication Machinery Family AT4G19130 46.552 9.10e-25 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0579 K07466 - gmx:100812465 343.199