Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0566 ATGGCAGATGATCATGGTGATGATAATCCTTTATCTGACAACGTTATTGTCCTACTTATTGCCATGGGTTCAGCATTATTTGTTGTTTCAATGTATCACGTCGTAGCCATTTGTTTTTGTAACCAACAACGCACTACCAACCCACCACAACCAGCGCGGAACCCCGCGACACCGAGCCTTGATGAAAGCACATCCACATCAGTAGCAAACCTAATTCCAACACACAAGTACCATAAGAGAAATAAAGCTGATGCTGTTTCGGATGACGAAGGCGGCACGTGTGCAGTATGTTTGGGAGATTTTGAGGAAGGTGAGGAGTTGAGAACTATGCCTGAGTGTTTGCACTCTTTTCATGTTTCATGTATTGATATGTGGCTCCATTCGCATTCGAGTTGCCCCATTTGCCGCGCCAGTGCCGCCCCTTCACCGACGTTGAATGTGCAGCATCATAGCATCGATATGCGTCATATCAATATGGCTCCACTTGCTATCATGCAAAGTGGATTGGTGAGATGGTGA 519 0.4586 MADDHGDDNPLSDNVIVLLIAMGSALFVVSMYHVVAICFCNQQRTTNPPQPARNPATPSLDESTSTSVANLIPTHKYHKRNKADAVSDDEGGTCAVCLGDFEEGEELRTMPECLHSFHVSCIDMWLHSHSSCPICRASAAPSPTLNVQHHSIDMRHINMAPLAIMQSGLVRW* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0566 172 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 2 172 IPR044675 -
Mal6g0566 172 SMART ring_2 94 135 IPR001841 -
Mal6g0566 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 141 IPR013083 -
Mal6g0566 172 SUPERFAMILY RING/U-box 82 142 - -
Mal6g0566 172 ProSiteProfiles Zinc finger RING-type profile. 94 136 IPR001841 -
Mal6g0566 172 MobiDBLite consensus disorder prediction 46 65 - -
Mal6g0566 172 Pfam Ring finger domain 93 136 IPR001841 -
Mal6g0566 172 CDD RING-H2_PA-TM-RING 93 136 - -
Mal6g0566 172 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 2 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0566 Mal-Chr6 7517129 7517647 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0566 94 154 C3H Transcription Factor Family AT4G10160 50.820 4.08e-21 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0566 - - aip:107639941 197.208