Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0565 ATGGCAGATGATGATGGTGATAATCCTTTTTATGACAACGTTATTGTTGTACTTATTATCGTGGGTTCAGCTGCATTTGTTGTTGCCTCAATGTACCGTGTCATAGTCATTTGGTGTTGTCACCAGCAAAGCACCATCATCACAAATCAAAACCCCCCACAACCACCGCGGATTGCCACAACACCAAGCCTTGGCGAAAGCACATCCTCATCAGTAGCAAACCTAATTCCAACACACAAGTACCACAAGAGAAACAAAGCTGACGTTGTCTCAGATGACGAAGGCGGCACATGTGCGGTGTGTTTGGGAGATTTTGAGGAAGGTGAGGAATTGAGGACTATGCCTGAGTGCTTGCATTCTTTTCATGTACCGTGTATTGACATGTGGCTCCATTCACATTCAAGTTGCCCCATTTGTCGTTCCAGTGCCGCCCCTTCGCCAGCGGTGAATGCACAACATCACAGGATAGATATGAGTCATGTGGCTCCACTTACTATCATGCAAAGTGGATTGATGCGAAGGTGA 525 0.4629 MADDDGDNPFYDNVIVVLIIVGSAAFVVASMYRVIVIWCCHQQSTIITNQNPPQPPRIATTPSLGESTSSSVANLIPTHKYHKRNKADVVSDDEGGTCAVCLGDFEEGEELRTMPECLHSFHVPCIDMWLHSHSSCPICRSSAAPSPAVNAQHHRIDMSHVAPLTIMQSGLMRR* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0565 174 SMART ring_2 98 139 IPR001841 -
Mal6g0565 174 Pfam Ring finger domain 97 140 IPR001841 -
Mal6g0565 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 145 IPR013083 -
Mal6g0565 174 SUPERFAMILY RING/U-box 82 146 - -
Mal6g0565 174 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 2 174 IPR044675 -
Mal6g0565 174 MobiDBLite consensus disorder prediction 50 69 - -
Mal6g0565 174 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 2 174 - -
Mal6g0565 174 ProSiteProfiles Zinc finger RING-type profile. 98 140 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0565 Mal-Chr6 7514832 7515356 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0565 16 141 C3H Transcription Factor Family AT5G17600 36.434 7.67e-22 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0565 - - aprc:113870478 175.252