Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0539 ATGGAAGATGATGAAGTGTTGTTGTTGTCATCTTCTGATTCTGATTTTGGTTCCGGTGACGATGAAGTCGAAGTGTTGTCTTCTGATTCGGAAGTGGAAGAACGGAAATCTCAGAATGTAGAAGCCCTAATCAAGGGTAATCTGATCGTGAAGAGACAATCGTTGCTGCCGCGAGTATATTCGACGAATGGAGCTGCGGCTATTTGCAGAAAACCGTTTAAACCTCCATCCGATGCTTATTATAATAATAACAACAATCAAGATCTCGCTCGTAGGCTCTCTGCTCGCAAAAGATTTGTCCCATGGGGTTCTACTACTCCTACTCCTATTCCTATTGCTATTCCCACACCTTTGGCTGAATTGGATTTGAATATACCCCCCGATCACAAAGAGGACCCGCCTTTGCCCCCTGGAATTGATCCTCTAATACTCTGGCAACCTCCTCCTCATCAGCAAGAACAAGACCCTTCCAATTCTAATTTCACAACAATATCAGTTGATCCTTTGCTTGTTCGTTTCCTTCGTCCACATCAGAGAGAAGGGGTTCAATTTATGTTTGACTGTGTTGCCGGACTCTGTGACACTCCCGGTATCAATGGATGCATTTTGGCAGATGATATGGGTTTGGGGAAGACACTGCAATCCATCACATTACTATATACTCTTATTTGTCAAGGATTTGATGGGAAGCCTATGGTTAGAAAGGCCATCATTGTCACTCCTACAAGCCTTGTCAGCAATTGGGAAGCTGAAATCAACAAGTGGCTTGGAGATAGAGTTCGCCTTGTTGCTCTTTGTGAAACCACAAGACAGGATGTTATCTCCGGGATTAACACTTTTACAACTCCCCAAAGCAAATTACAGGTGCTCATTGTTTCATACGAGACATTCCGAATGCATTCAGACAAGTTTAGCTCTAGTGGCTCGTGTGACCTCCTCATCTGTGATGAGGCTCACAGACTGAAAAATGATCAGACAATAACAAACAAGGCATTGGCTGCTCTCCCGTGCAAACGTAGAGTTTTGTTGTCAGGAACTCCTTTGCAGAATGACTTAGAGGAATTCTTTGCAATGGTCAACTTTACTAATCCTGGAATATTGGGCGGCATTGCACATTTTCGACGTTACTTTGAGGCGCCAATAATTTGCGGAAGAGAACCTGCTGCTACTGCAAAAGAGAAGAAACTTGGTGGTGAACGCACTGCAGAATTAAGTGCCAAAGTTAATCAGTTCATATTAAGAAGGACTAATGCATTGCTATCAAATCACTTACCACCGAAGATAATTGAAGTTGTTTGCTGCAAGTTGACTCCGCTACAATCAGATCTATACAATCATTTTATACAGTCCAAAAATGTTAAACGGGTGATTACTGAAGAACTGAAGCAATCGAAGATTTTGGCCTACATAACAGCTCTAAAAAAGTTATGCAATCATCCAAAGCTCATATATGATACCATACGAAGTGGGAGTCCAGGAACTTCAGGTTTTGAGGACTGCATCCGATTCTTCCCTCCAAATATGTTATCTGGAAGGTCTGGATCATGGACAGGAGGGGATGGAGGTTGGGTTGAGCTTTCCGGTAAAATGCAAGTCTTGGCAAGATTACTTCATCAATTACGCCAGCGAACAAATGATCGCATTGTCCTTGTCTCAAACTATACTCAGACTCTTGATCTTTTTGCTCAATTGTGCCGGGAACGAAGGTACCCTCACTTGAGGCTTGATGGCGCAACATCAATCAGTAAAAGGCAAAAGTTGGTCAACTGCTTGAATGACCCGTCTAAGGACGAATTTGTTTTTCTCTTAAGCAGCAAGGCTGGTGGTTGTGGACTCAATTTGATTGGGGCAAATCGACTCGTCTTGTTTGATCCTGATTGGAATCCAGCAAATGATAAACAAGCTGCAGCAAGAGTGTGGAGGGATGGACAGAAGAAAAGAGTTTACATTTATAGATTTTTGAGTGCCGGAACAATAGAAGAAAAGGTCTACCAGCGTCAGATGGCAAAAGAAGGGCTGCAAAAGGTCATTCAGAGGGAGCAAAATGATAGCGTCGCGGCACAGGGCAACTTTCTCTCGACAGAGGATCTTCGCAATTTGTTTACTTTTGATGAGAACGTCAAGTCAGATATTCATGAAAATATGCGATGCAGTCGGTGCAAAACAAATGACGGGCCTCAAGACACTGATGTCTTATCAACAATGATCAATAGTGAATGTGATTATGATGAAACCTCTGATATAGGTGGATTTGCTGAAATTGCAGGCTGCTTAGGGCATTTGAAAAGATCAGAAAAGCAGGTAGGGAATCCATTGGAAGAAGATTTAAGTAGTTGGGGCCATCATTTTTCCCCAACCTCTGTACCAGATGGTATCCTTCAGGCTTCAGCTGGCGATGAGGTGACTTTTGTCTTTACAAACCAAGTTGATGGAAAGCTGGTACCGGTTGACTCCATAAGTCCCAAGGTACAGAAAAAGGAATTACACAAGCCAAGGCGCAACGTCGAGCGAAAATCAACCCCTTTTGCTTTACATAATAAGCTAGTGCCACTACGTTCTGCATCCAATATTGCCAATGTGTCATGCTCATCTTCAATTACTTGGACATTAAACACCGAACATTCTCTTGTAAATAAAATTTCAAGACAGAAAAGATCATGCCCTGCTGATATCAATGATGGACACACCCTTGTAAATGAATTATCACAGAAAAAATCATGTCATATTGATAACAATGATGATAATTTTGAATAA 2754 0.4216 MEDDEVLLLSSSDSDFGSGDDEVEVLSSDSEVEERKSQNVEALIKGNLIVKRQSLLPRVYSTNGAAAICRKPFKPPSDAYYNNNNNQDLARRLSARKRFVPWGSTTPTPIPIAIPTPLAELDLNIPPDHKEDPPLPPGIDPLILWQPPPHQQEQDPSNSNFTTISVDPLLVRFLRPHQREGVQFMFDCVAGLCDTPGINGCILADDMGLGKTLQSITLLYTLICQGFDGKPMVRKAIIVTPTSLVSNWEAEINKWLGDRVRLVALCETTRQDVISGINTFTTPQSKLQVLIVSYETFRMHSDKFSSSGSCDLLICDEAHRLKNDQTITNKALAALPCKRRVLLSGTPLQNDLEEFFAMVNFTNPGILGGIAHFRRYFEAPIICGREPAATAKEKKLGGERTAELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSDLYNHFIQSKNVKRVITEELKQSKILAYITALKKLCNHPKLIYDTIRSGSPGTSGFEDCIRFFPPNMLSGRSGSWTGGDGGWVELSGKMQVLARLLHQLRQRTNDRIVLVSNYTQTLDLFAQLCRERRYPHLRLDGATSISKRQKLVNCLNDPSKDEFVFLLSSKAGGCGLNLIGANRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSAGTIEEKVYQRQMAKEGLQKVIQREQNDSVAAQGNFLSTEDLRNLFTFDENVKSDIHENMRCSRCKTNDGPQDTDVLSTMINSECDYDETSDIGGFAEIAGCLGHLKRSEKQVGNPLEEDLSSWGHHFSPTSVPDGILQASAGDEVTFVFTNQVDGKLVPVDSISPKVQKKELHKPRRNVERKSTPFALHNKLVPLRSASNIANVSCSSSITWTLNTEHSLVNKISRQKRSCPADINDGHTLVNELSQKKSCHIDNNDDNFE* 918
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0539 917 CDD DEXHc_RAD54 174 415 - -
Mal6g0539 917 SMART helicmild6 559 643 IPR001650 -
Mal6g0539 917 CDD SF2_C_SNF 526 654 - -
Mal6g0539 917 Pfam SNF2-related domain 177 483 IPR000330 GO:0005524|GO:0140658
Mal6g0539 917 PANTHER SNF2/RAD54 FAMILY MEMBER 47 832 - -
Mal6g0539 917 SMART ultradead3 170 373 IPR014001 -
Mal6g0539 917 Pfam Helicase conserved C-terminal domain 533 642 IPR001650 -
Mal6g0539 917 Gene3D - 437 706 - -
Mal6g0539 917 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 419 805 IPR027417 -
Mal6g0539 917 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 47 832 - -
Mal6g0539 917 MobiDBLite consensus disorder prediction 1 32 - -
Mal6g0539 917 Gene3D - 147 414 IPR038718 -
Mal6g0539 917 Gene3D - 415 724 IPR027417 -
Mal6g0539 917 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 532 693 IPR001650 -
Mal6g0539 917 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 192 365 IPR014001 -
Mal6g0539 917 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 415 IPR027417 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Mal6g0539 Mal-Chr6 6862192 6871775 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0539 200 663 RAD5 or RAD16-like Gene Family AT3G16600 24.670 9.30e-25 108
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mal6g0539 SNF2_N 1.7e-52 CL0023
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0539 K10875 - gmx:100781631 1355.12