LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal6g0520	ATGGCTACAACAGCAACAGCAACAGCAACATTGGTGTCCGGTCGAGAACTGACGAACCCACCGTCAGACGGAATCTCGAACATTCGATTCTCAAACCACAGCGATCATCTTCTGGTTTCTTCTTGGGACAAAACGGTGCGTCTCTACGATGCAAGTGCAAATGTGCTTAGAGGTGAATTCCTTCACGCCGGACCTGTACTTGATTGTTGCTTCCACGATGACTCTTCTGGTTTCAGTGCCTCCGCTGATAACACTGTCAGACGTCTCTTATTCGGCACCGGCAAGGAGGATATTTTGGGAAAGCATGATGCTCCTGTTCGTTGTGTTGAGTACTCCTATGCCGCAGGGCAATTGATCACTGGTAGTTGGGACAAAACCATAAAGTGTTGGGACCCTAGAGGTGCAAGTGGACAAGAGCGCACTCTAGTTGGGACATATTTACAGCCTGAGCGTGTTTACTCTCTATCTCTTGTTGGACATCGGCTTGTTGTAGCGACAGCTGGAAGACATGTTAATGTTTATGACTTGAGGAACATGTCTTGTCCTGAACAACGAAGGGAATCTTCATTGAAATATCAAACCAGATGTGTACGCTGCTACCCAAATGGAACAGGCTATGCACTTAGTTCTGTTGAAGGGAGGGTTGCAATGGAATTCTTTGACCTATCTGAGGCTAGCCAGGCAAAGAAATATGCTTTCAAGTGTCACAGAAAATCTGAAGCTGGAAGGGATATTGTCTATCCTGTAAACGCCATGGCATTCCACCCCATATATGGTACATTCGCCACAGGAGGTTGTGACGGTTTTGTTAATGTATGGGACGGAAACAACAAAAAGAGATTATACCAGTATTCAAAATATCCAAGTAGCATTGCTGCACTTTCATTTAGCAGAGATGGACGCCTCCTAGCTGTTGCATCAAGTTACACTTTTGAAGAGGGACCTAAACCCCATGAACAAGATGCTATCTACGTTCGCAGCGTGAACGAGATTGAGGTCAAGCCAAAACCCAAAGCCCTTCCCAATCCTGCAGCGTGA	1038	0.4615	MATTATATATLVSGRELTNPPSDGISNIRFSNHSDHLLVSSWDKTVRLYDASANVLRGEFLHAGPVLDCCFHDDSSGFSASADNTVRRLLFGTGKEDILGKHDAPVRCVEYSYAAGQLITGSWDKTIKCWDPRGASGQERTLVGTYLQPERVYSLSLVGHRLVVATAGRHVNVYDLRNMSCPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAMAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPSSIAALSFSRDGRLLAVASSYTFEEGPKPHEQDAIYVRSVNEIEVKPKPKALPNPAA*	346

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal6g0520	345	PRINTS	G protein beta WD-40 repeat signature	37	51	IPR020472	-
	Mal6g0520	345	PRINTS	G protein beta WD-40 repeat signature	118	132	IPR020472	-
	Mal6g0520	345	PRINTS	G protein beta WD-40 repeat signature	261	275	IPR020472	-
	Mal6g0520	345	Pfam	WD domain, G-beta repeat	233	274	IPR001680	GO:0005515
	Mal6g0520	345	Pfam	WD domain, G-beta repeat	99	131	IPR001680	GO:0005515
	Mal6g0520	345	Pfam	WD domain, G-beta repeat	23	50	IPR001680	GO:0005515
	Mal6g0520	345	PANTHER	MRNA EXPORT FACTOR AND BUB3	13	340	-	-
	Mal6g0520	345	ProSiteProfiles	Trp-Asp (WD) repeats profile.	99	131	IPR001680	GO:0005515
	Mal6g0520	345	Gene3D	-	2	339	IPR015943	GO:0005515
	Mal6g0520	345	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	99	131	-	-
	Mal6g0520	345	ProSiteProfiles	Trp-Asp (WD) repeats profile.	249	283	IPR001680	GO:0005515
	Mal6g0520	345	SUPERFAMILY	WD40 repeat-like	20	308	IPR036322	GO:0005515
	Mal6g0520	345	SMART	WD40_4	10	50	IPR001680	GO:0005515
	Mal6g0520	345	SMART	WD40_4	53	90	IPR001680	GO:0005515
	Mal6g0520	345	SMART	WD40_4	139	175	IPR001680	GO:0005515
	Mal6g0520	345	SMART	WD40_4	277	327	IPR001680	GO:0005515
	Mal6g0520	345	SMART	WD40_4	226	274	IPR001680	GO:0005515
	Mal6g0520	345	SMART	WD40_4	92	131	IPR001680	GO:0005515
	Mal6g0520	345	PANTHER	MITOTIC CHECKPOINT PROTEIN BUB3.2	13	340	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal6g0520	Mal-Chr6	6628522	6632161	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal6g0520	99	307	U-box Gene Family	AT2G33340	25.581	9.11e-08	51.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal6g0520	K02180		-	gmx:100820541	627.861