Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0518 ATGGAACCTACTGAGCTTATTTCTCAAGAATGGACTTCTCTCAGTGGACTCTACACTGCTGAAGAATATGACTTTATGAACCAGTTACTTGGTAATAACTGCTCATTCCCACAACACCTCTTTCAAAATTCCAATTTCGGGGGAACTCAAACTGCATTTTGGCCACCACATGATTCCACAATAGTTACTGCCACAAAAATTAACACCAACAATTCTAGCTCAACTTCTGATACTAGTAACCTCTTCCCCACAAGTTGCTTCAACAACAATCCAGTAACCAGCTCTGACTATATTTCTATGGGCCTTTCCATAGATGATTCCAAATTCACTCCATATACAACACAGTATGATGAACAAGTTCTAGCAAACAAAAATTTGCAGGCCCGAAAAACGGAACGTGAAATACTAGTTTCTGAACCAGAAGAAGATAAAACCACAAGCACAGAAAATTCAGGAAAAAGATCTAGGAGCTCAAATGAGGTCCCAAAGAACAAGAGGAATGTTAAATGTAGGAAGATTATTAGACGTGCTTCTATAAGCACTGAAGAGAATACAAGTCCTGGTTCTCAGGATCAAACCTTAAGCGGTTATTGTTCCGAGGATGAGTCCAATTCTTCTCACGAGCTACGTGGAAGGGAATCTTCAAGTTTGAGCCAGAATGATTCTACAGCTCTGAAATTAAGTGGCAAATCAAGATCTAGTAGAGGTCCTGCTACTGATCCACAGAGCCTCTATGCAAGAAAAAGAAGAGAAAGAATAAATGAAAGGTTGAAAATCCTACAAAACCTTGTCCCCAATGGAACTAAGGTAGCTTTCTTTTTCAATGACATTCACTCTGTTGTCAAACAACTAGTTAATATGTTCCTTGGTGAACTGCAGGTGGATATCAGCACCATGCTTGAGGAAGCTGTCCAATATGTGAAATTTTTACAGCTTCAAATTAAGCTTCTAAGCTCAGATGATTTGTGGATGTACTCTCCCATTGCTTACAATGGAATGAACATTGGACTGGAACTTGGTATTACCCCAACAAAAGAAACAAAGGACATGCATAACATAGCAGCAATAAAAGAGAATGCAGCAGCAGTTTAA 1092 0.391 MEPTELISQEWTSLSGLYTAEEYDFMNQLLGNNCSFPQHLFQNSNFGGTQTAFWPPHDSTIVTATKINTNNSSSTSDTSNLFPTSCFNNNPVTSSDYISMGLSIDDSKFTPYTTQYDEQVLANKNLQARKTEREILVSEPEEDKTTSTENSGKRSRSSNEVPKNKRNVKCRKIIRRASISTEENTSPGSQDQTLSGYCSEDESNSSHELRGRESSSLSQNDSTALKLSGKSRSSRGPATDPQSLYARKRRERINERLKILQNLVPNGTKVAFFFNDIHSVVKQLVNMFLGELQVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYSPIAYNGMNIGLELGITPTKETKDMHNIAAIKENAAAV* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0518 363 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 237 310 IPR011598 GO:0046983
Mal6g0518 363 MobiDBLite consensus disorder prediction 133 167 - -
Mal6g0518 363 Gene3D - 243 319 IPR036638 GO:0046983
Mal6g0518 363 MobiDBLite consensus disorder prediction 179 202 - -
Mal6g0518 363 CDD bHLH_AtIND_like 238 324 - -
Mal6g0518 363 Pfam Helix-loop-helix DNA-binding domain 247 311 IPR011598 GO:0046983
Mal6g0518 363 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 237 326 IPR036638 GO:0046983
Mal6g0518 363 MobiDBLite consensus disorder prediction 210 240 - -
Mal6g0518 363 MobiDBLite consensus disorder prediction 133 247 - -
Mal6g0518 363 PANTHER TRANSCRIPTION FACTOR BHLH54 294 343 - -
Mal6g0518 363 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 294 343 - -
Mal6g0518 363 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 270 - -
Mal6g0518 363 SMART finulus 243 316 IPR011598 GO:0046983
Mal6g0518 363 PANTHER TRANSCRIPTION FACTOR BHLH54 7 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0518 Mal-Chr6 6620549 6621974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0518 10 337 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 39.130 1.40e-55 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mal6g0518 HLH 2.8e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0518 - - mtr:MTR_5g005110 547.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g0518 6 6620549 6621974 Mal1g0578 1 6658372 6660031 PCT