Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0466 ATGGAGCAAGCACTTATCGGTGCGCTGAACCTCGTTTCTCGAGACCTTCCTCTTCCTCCTGAACTCTTCAACACCGTTTCTTCTATTTGTTACGGATCTGAACCCAAACCTCTCCCTCTCAACTCCGAGGTCGATGCAGGAAATTCTACACAAGATGATGATTTATTGACTGAGCTTCAAGATGCAATTTCCAAACAACGACCTAATTGTGCGTATAGTTCTAAATTGAATAATGCAATGAAAATTCGTACTCAAGCTCGGATGCAAAATCGCTTAACTCAGCTTGAAGGATTGCGTTGGAACTGGGGGGATAACCTACAGACAAAGTGCTTGCTCGAGCTTTATGGACTAAAGCTAGCGGAGTTGCAAGGGAAGGTTCGGACGGAAGTGAGTTCTGAATATTGGCTTAATGTTCAATGTGCATATCCCGACAAGCAATTGTTTGACTGGGGCATGATGCGGTTGCGGCGTCCTCCTTATGGTATTGGCGATCCATTTGCCGTGGATGCTAATGATCAAATAAGGAAGAAACGGGATGCGGAGAGATTATCTAGATTAGAAGAGCAAGCAAAAGGTCAGATAGAGACCAGAACAAGAAGATTTTTTGCAGAAATACTCAATGCTGTCCGTGAGTTCCAGTTACAAATCCAAGGTTCTTTGAAGAGGAGAAAACAGAGGAATGATGCTGTTCAGGCATGGCATGGAAGGCAAAGGCAACGTGCAACTCGGGCTGAGAAATTGAGATTCCAAGCTTTAAAGGCTGATGATCAGGAAGCTTACATGAGAATGGTGAAAGAGAGTAAGAATGAAAGATTAACTTTGCTTCTTGAAGAAACAAATAAACTGCTTGTAAATTTGGGAGCAGCGGTTCAACGTCAAAGAGACTCCAAACAATCAAATGGCATTGAACCCTTGGAAGATTCAGAAGCATTGAAAAATGGAATTTCTAAGGAATCACCTGTTGAGGAAGATGAGGATTTGATGGATTCTGATAATAATGATGAGACTGGTGATTTACTTGAAGGTCAGCGGCAATACAATTCTGCCATACATTCCATTCAAGAAAAGGTAACTGAGCAACCATCTATCCTTCAAGGTGGAGAATTAAGACCATACCAGATAGAAGGGCTCCAGTGGATGCTTTCTTTGTTTAATAACAACTTAAATGGAATTTTGGCTGATGAAATGGGGCTTGGAAAGACAATACAAACCATTTCGTTGATAGCACATCTTATGGAATACAAGGGTGTGAATGGCCCTTTTTTGATTGTCGCTCCAAAGGCTGTTCTGCCAAATTGGGTCAACGAGTTCTCAACATGGGCTCCTAGCATTACAGCTGTTCTATACGACGGACGAATGGATGAGAGGAAAGCAATAAAAGAAGAACTGTCAGGGGAGGGGAAATTTAATGTTCTTTTAACACACTATGATCTTATAATGAGAGATAAAGCATTTCTGAAGAAAATCCATTGGAAATACTTGATTGTTGATGAGGGGCATCGATTGAAGAATCATGAGTGTGCTCTAGCAAGAACCCTGGACTCTAGCTATCACATTGAACGAAGACTTCTGTTGACTGGTACCCCAATTCAGAACAGCCTGCAGGAATTGTGGTCCCTGCTCAATTTTCTCCTCCCAAGCATTTTCAATTCAGTTCAGAATTTCGAGGACTGGTTTAATGCTCCCTTTGCAGATCGAGTTGATGTGTCCTTAACAGATGAAGAACAATTATTGATTATTCGCCGTCTGCATCAGGTAATAAGGCCCTTCATACTAAGAAGGAAAAAGGCTGAGGTAGAAAAGTTTCTTCCTGGGAAATCTCAGGTCATACTCAAATGTGACATGTCAGCCTGGCAAAAAGTGTATTATCAACAAGTGACTGACGTGGGCAGAGTTGGGTTAGACTATGGTTCTGGAAAATCAAAAAGTCTACAGAACTTGACAATGCAACTCAGGAAGTGCTGTAACCATCCCTACCTCTTTGTGGGAAACTATGATATATATCGTAGAGAGGAGATTGTCAGAGCATCAGGGAAATTTGAACTTCTTGACCGCTTGCTTCCAAAACTTCGTAGAGCTGGTCATAGAGTCCTCCTTTTTTCACAAATGACTCGTCTCATGGACATTCTTGAAGTTTATCTTCAACTTCATGATTATAAATTTCTTAGACTTGATGGCTCAACAAAAACTGAGGAAAGAGGTTCCCTTCTAAAGAAATTCAATGCTCCTGACTCACCATACTTTATGTTTCTCTTGAGCACTCGTGCCGGAGGTCTTGGTTTGAACTTGCAAACAGCAGATACTGTTATAATCTTTGACAGTGATTGGAACCCACAAATGGATCAACAAGCTGAGGATCGAGCCCATCGCATTGGGCAGAAAAAGGAAGTTAGAGTTTTTGTGTTAGTTAGTGTGGGATCAATTGAAGAGGTGATTTTGGAACGTGCTAAACAAAAGATGGGAATTGATGCCAAAGTCATCCAGGCAGGCCTTTTCAACACAACGTCAACAGCCCAGGACAGGAGAGAAATGTTGGAGGAGATTATGCGCAGAGGTAGTAGCTCACTTGGAACGGATGTGCCAAGTGAGAGAGAAATTAACCGCCTTGCTGCCCGATCCGATGAGGAGTTTTGGCTGTTCGAGAGAATGGACGAAGATAGAAGGCAAAAGGAGAACTACAGATCTCGTCTCATGGATGAGAATGAACTGCCAGATTGGGTATACTCTGCACTAAATAAGGATGACAAGGTCAAAGCTTTTGACAGCAGTAGTGTTACTGGAAAGCGGAAAAGAAAAGAAGTGGTATATGCAGATACGTTAAGCGATCTACAATGGATGAAGGCTGTGGAAAGTGGACATGATGTATCTAATCCTTCAGCCAAAGGAAAAAGAAGAATCCGTCTCCCTATTGACAGCCATGCGCAAACGAGTGATGACACTGGGGCAGAAGAAAGGTTGTTAGAGTTAAGCAACACCGTGGCAAATGAGAGATCAAATGAAGATACTTTTTATGCGACCCCTGCCTCTAAGAGGTTCAAGCATGAAGAAATAAGTTCCCATAATCATGAAATCAAGGATACCGGAGTAAGTGGTTTGAACGAGCATGTGTTCTCATGGAATACTCACAGAAAGAAGAGATCAAGCTATCCTAGCCAGGGTTCAGTATCTGATACCAGAGGGCAGAATGCAAATGGAAGAAGAGGAGACTAA 3210 0.4221 MEQALIGALNLVSRDLPLPPELFNTVSSICYGSEPKPLPLNSEVDAGNSTQDDDLLTELQDAISKQRPNCAYSSKLNNAMKIRTQARMQNRLTQLEGLRWNWGDNLQTKCLLELYGLKLAELQGKVRTEVSSEYWLNVQCAYPDKQLFDWGMMRLRRPPYGIGDPFAVDANDQIRKKRDAERLSRLEEQAKGQIETRTRRFFAEILNAVREFQLQIQGSLKRRKQRNDAVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQRDSKQSNGIEPLEDSEALKNGISKESPVEEDEDLMDSDNNDETGDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRPYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAHLMEYKGVNGPFLIVAPKAVLPNWVNEFSTWAPSITAVLYDGRMDERKAIKEELSGEGKFNVLLTHYDLIMRDKAFLKKIHWKYLIVDEGHRLKNHECALARTLDSSYHIERRLLLTGTPIQNSLQELWSLLNFLLPSIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKAEVEKFLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDYGSGKSKSLQNLTMQLRKCCNHPYLFVGNYDIYRREEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEVYLQLHDYKFLRLDGSTKTEERGSLLKKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGSSSLGTDVPSEREINRLAARSDEEFWLFERMDEDRRQKENYRSRLMDENELPDWVYSALNKDDKVKAFDSSSVTGKRKRKEVVYADTLSDLQWMKAVESGHDVSNPSAKGKRRIRLPIDSHAQTSDDTGAEERLLELSNTVANERSNEDTFYATPASKRFKHEEISSHNHEIKDTGVSGLNEHVFSWNTHRKKRSSYPSQGSVSDTRGQNANGRRGD* 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0466 1069 MobiDBLite consensus disorder prediction 1041 1069 - -
Mal6g0466 1069 Pfam SNF2-related domain 372 660 IPR000330 GO:0005524|GO:0140658
Mal6g0466 1069 MobiDBLite consensus disorder prediction 322 336 - -
Mal6g0466 1069 CDD SF2_C_SNF 669 803 - -
Mal6g0466 1069 Pfam Snf2-ATP coupling, chromatin remodelling complex 881 946 IPR029295 GO:0042393
Mal6g0466 1069 Gene3D - 604 823 IPR027417 -
Mal6g0466 1069 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 344 594 IPR027417 -
Mal6g0466 1069 Coils Coil 883 903 - -
Mal6g0466 1069 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 381 547 IPR014001 -
Mal6g0466 1069 SMART ultradead3 365 558 IPR014001 -
Mal6g0466 1069 MobiDBLite consensus disorder prediction 1041 1063 - -
Mal6g0466 1069 PANTHER SNF2/RAD54 HELICASE FAMILY 53 1022 - -
Mal6g0466 1069 SMART SnAC_2 885 946 IPR029295 GO:0042393
Mal6g0466 1069 Pfam Helicase conserved C-terminal domain 679 792 IPR001650 -
Mal6g0466 1069 Gene3D - 360 603 IPR038718 -
Mal6g0466 1069 MobiDBLite consensus disorder prediction 293 339 - -
Mal6g0466 1069 PANTHER ATP-DEPENDENT HELICASE BRM 53 1022 - -
Mal6g0466 1069 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 682 849 IPR001650 -
Mal6g0466 1069 SMART helicmild6 708 792 IPR001650 -
Mal6g0466 1069 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 596 847 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0466 Mal-Chr6 5900795 5908048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0466 675 820 RAD5 or RAD16-like Gene Family AT5G43530 36.667 1.04e-20 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mal6g0466 SNF2_N 8e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0466 - - gmx:100775993 1753.03