Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0456 ATGATAATGCAAGCAGCCGCAGAGAAGCTAGTTTCCGTCGTAGGTCACTGGCTCCCGTTCCGACGACAACAACAGCAAAGAAGAATAGTTTTCTATGATGAAGCTGATGATAACAATATGTGGGTGAATTGTCCATTCAATAATTGCTCTGTTTCTTTGTTGAATGATGGGTTTGAAACTGTTACCAATGCAGAGTGTCCCGTTTGTCATAGGTTATTCTGTGCTCAATGCAACGTTCCTTGGCATGCAGATTTCACCTGTCAACAATTTCAACACAACCAACTCAAATGCTCTTTGTATGAAACCTTTGATTTCCACGAAAACCATGTTTCGAACAAGAGAAAATCTCCCTCTGGTGATGAAGAAAATCTAACACCGGTTTCACGGTACAAGTCATCATGTCCAACTAAAAAGAGTTCACGTCTATGTAACCAGTCTCCTAATCCTCCTCCACTTCAATGCAATATAAAGGAGAAGAAAGTTGAAGAAGATTTGGTGGAATCTTGTATTGTTGGGATGGAAAAGACTACTCATTGTCCATTTTGGAATTGCGCAGTTTTGTTGCTGAATGATGAGGATGAATTTGTTACTAGTGCGGAGTGTCCTTCCTGTCATAGGCTATTTTGTGCACAATGTAAGGTTCCGTGGCATGGAGGAATCAGCTGCGACGAATTCCAACAAAAAATTAAGGGGAAAGAAGCAGCAGCTGCCATAGAGACCGAGACTGGTTCTCGACAGTCACCAAAATCCTTTTGTGGTATATGTTTTGATTTCATATCAGATAATGATATTGTTAGAGGAAGTGGCACATGCAATCACCCCTTTTGTGCAAATTGCATATCTAACTATGTGGCTGAAAAACTAAGCCAGAGTATAATGGAGTTTAATTGTCCAAATCCAAGATGTTTCGAGGATTTGAAGCCGCAACATTTGCATACCATTTTGCCAGAAGAAGTTATTGTTCGATGGGAATCTGAAAGGATTTAG 987 0.4032 MIMQAAAEKLVSVVGHWLPFRRQQQQRRIVFYDEADDNNMWVNCPFNNCSVSLLNDGFETVTNAECPVCHRLFCAQCNVPWHADFTCQQFQHNQLKCSLYETFDFHENHVSNKRKSPSGDEENLTPVSRYKSSCPTKKSSRLCNQSPNPPPLQCNIKEKKVEEDLVESCIVGMEKTTHCPFWNCAVLLLNDEDEFVTSAECPSCHRLFCAQCKVPWHGGISCDEFQQKIKGKEAAAAIETETGSRQSPKSFCGICFDFISDNDIVRGSGTCNHPFCANCISNYVAEKLSQSIMEFNCPNPRCFEDLKPQHLHTILPEEVIVRWESERI* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0456 328 ProSiteProfiles Zinc finger RING-type profile. 252 301 IPR001841 -
Mal6g0456 328 Pfam IBR domain, a half RING-finger domain 34 87 IPR002867 -
Mal6g0456 328 Pfam IBR domain, a half RING-finger domain 166 222 IPR002867 -
Mal6g0456 328 SUPERFAMILY RING/U-box 160 228 - -
Mal6g0456 328 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 143 229 - -
Mal6g0456 328 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 33 102 IPR031127 GO:0004842|GO:0016567
Mal6g0456 328 SUPERFAMILY RING/U-box 249 324 - -
Mal6g0456 328 SUPERFAMILY RING/U-box 29 93 - -
Mal6g0456 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 328 IPR013083 -
Mal6g0456 328 Pfam Zinc finger, C3HC4 type (RING finger) 252 298 IPR018957 GO:0046872
Mal6g0456 328 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 33 102 - -
Mal6g0456 328 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 240 325 - -
Mal6g0456 328 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 143 229 IPR031127 GO:0004842|GO:0016567
Mal6g0456 328 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 240 325 IPR031127 GO:0004842|GO:0016567
Mal6g0456 328 SMART ibrneu5 159 222 IPR002867 -
Mal6g0456 328 SMART ibrneu5 24 87 IPR002867 -
Mal6g0456 328 ProSitePatterns Zinc finger RING-type signature. 271 280 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0456 Mal-Chr6 5849265 5850251 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0456 252 302 ARIADNE family AT1G05890 39.623 8.62e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0456 K11975 - mtr:MTR_5g007670 112.079