Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0377 ATGGTTTCTCCACCAAGTCGCAAACACAATCGATCTCATGTCCCCAAAAGCACAAGAATATTGAAAATTGTTTATGATGATCTCGATGCAACTGATTCATCGTCAGATGAAGAAAAAGAAAACCATGATGAGCAAAGAAAGAGAGTTGTGCTAGTTGCAATCCCTCCTGTTTCTAATGACGCTGTTTGTGTCAATGAAACAATGAATAAGAGTTGTGCAAAGACACGAACAACCTTATTGAAAGAACAACCTTCTCGCAAGTATAAAGGTGTTCGATTAAGAAAATCAGGTAGATGGGCTGCAGAAATTCGTAACCCGATCAAACATATACGAGAATGGTTGGGTACTTTCGACACTCCAGAAGAGGCTTCAAAAGCTTATGAAGCTAGAAAGCTTGAACTTGAAGCCATACCTAAACGTTCGTGTTATGAGAAGAGGAACAATAGCTTCAACAATAATGTTACAATTGAGACTATGGTTGCTTATTTGAATGGCTCAAAGACTGATACAACAAATATATCGTCATCTTTGCTGCAACTCCAAATGACAAATTGTGTTTCAAATTTGATTGAGAGTGGTAATTTTTCAATGGACGAACCTTTTCTTGAGAGTCTTGAGACTAATTCTTTGGAGGATGAATTTAATTTCGATGACTTTGGAGCTGATGATAAAATTTCCCTTAAATTTGGCAGCTAG 696 0.3721 MVSPPSRKHNRSHVPKSTRILKIVYDDLDATDSSSDEEKENHDEQRKRVVLVAIPPVSNDAVCVNETMNKSCAKTRTTLLKEQPSRKYKGVRLRKSGRWAAEIRNPIKHIREWLGTFDTPEEASKAYEARKLELEAIPKRSCYEKRNNSFNNNVTIETMVAYLNGSKTDTTNISSSLLQLQMTNCVSNLIESGNFSMDEPFLESLETNSLEDEFNFDDFGADDKISLKFGS* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0377 231 Gene3D AP2/ERF domain 86 140 IPR036955 GO:0003700|GO:0006355
Mal6g0377 231 PRINTS Ethylene responsive element binding protein signature 88 99 IPR001471 GO:0003700|GO:0006355
Mal6g0377 231 PRINTS Ethylene responsive element binding protein signature 110 126 IPR001471 GO:0003700|GO:0006355
Mal6g0377 231 SUPERFAMILY DNA-binding domain 87 134 IPR016177 GO:0003677
Mal6g0377 231 ProSiteProfiles AP2/ERF domain profile. 87 144 IPR001471 GO:0003700|GO:0006355
Mal6g0377 231 Pfam AP2 domain 87 136 IPR001471 GO:0003700|GO:0006355
Mal6g0377 231 PIRSF PTI6 176 224 IPR017392 GO:0003700
Mal6g0377 231 PIRSF PTI6 2 190 IPR017392 GO:0003700
Mal6g0377 231 SMART rav1_2 87 141 IPR001471 GO:0003700|GO:0006355
Mal6g0377 231 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 8 220 - -
Mal6g0377 231 CDD AP2 87 129 IPR001471 GO:0003700|GO:0006355
Mal6g0377 231 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR-LIKE PROTEIN 8 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0377 Mal-Chr6 5056714 5057409 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0377 6 137 AP2-EREBP Transcription Factor Family AT1G68550 40.141 1.86e-21 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mal6g0377 AP2 8.7e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0377 - - mtr:MTR_5g057647 158.688