Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0371 ATGGAGGCTGTTGATTCTATGGAGAACCTTTGGGATTGCTTATCTGACATAGGTGAGGATGACAAACCTAAGGAAGCCGCCTTTCCTTCACTTAATCCATTGGACCTGGATGATTCCAACCATTCATTTTATGAGTTTGCAGAAGAGGAGCTTGAATGGATATCCAACAAAGATGCATTTCCAGCTGTTGAAACATTTGTTGACATGTTCTGTATTCAACCGGATATTTCGAAGTATCAAAAGATAGCAGCACCAATGCTCGAGAACAGCACAAGCAGTAGCAACAGCAATAACAGTTCCGACAGCATTACCCTCTTAAGTGGCGACAATCAAATGAAGTTCCCTGTCCGTGCACGGAGCAAGTCTCGTACTAGGCCTCGCCTTGGCATTTCTGAAACCTGGAACCATCAATTCGCGTGGAAACAACCGAATAACAAAAATTCCAAAGAACAAACGAAACAAACCTCAACCATTGGGAGGAAATGTCATCACTGTGGAGCTGATAATACTCCGCTATGGCGGTCAGGTCCCAATGGTCCAAAAACACTCTGTAATGCATGTGGGGTTAGGTATAGATCTGGCCGACTTGTACCTGAATACCGCCCTGCAAATAGCCCAACTTTTTGCAGCGGCGTGCATTCTAATTCCCACAGGAAAGTAGTGCAAATGAGGAAGCAGAAGGGAATGGGAATGAGTTGA 699 0.4478 MEAVDSMENLWDCLSDIGEDDKPKEAAFPSLNPLDLDDSNHSFYEFAEEELEWISNKDAFPAVETFVDMFCIQPDISKYQKIAAPMLENSTSSSNSNNSSDSITLLSGDNQMKFPVRARSKSRTRPRLGISETWNHQFAWKQPNNKNSKEQTKQTSTIGRKCHHCGADNTPLWRSGPNGPKTLCNACGVRYRSGRLVPEYRPANSPTFCSGVHSNSHRKVVQMRKQKGMGMS* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0371 232 ProSiteProfiles GATA-type zinc finger domain profile. 156 192 IPR000679 GO:0006355|GO:0043565
Mal6g0371 232 SMART GATA_3 156 206 IPR000679 GO:0006355|GO:0043565
Mal6g0371 232 Pfam GATA zinc finger 162 195 IPR000679 GO:0006355|GO:0043565
Mal6g0371 232 Gene3D - 155 207 IPR013088 GO:0006355|GO:0008270
Mal6g0371 232 PANTHER GATA TRANSCRIPTION FACTOR 1 38 227 - -
Mal6g0371 232 CDD ZnF_GATA 161 218 IPR000679 GO:0006355|GO:0043565
Mal6g0371 232 ProSitePatterns GATA-type zinc finger domain. 162 187 IPR000679 GO:0006355|GO:0043565
Mal6g0371 232 PANTHER GATA TRANSCRIPTION FACTOR 38 227 - -
Mal6g0371 232 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 158 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0371 Mal-Chr6 4909171 4910022 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0371 48 226 C2C2-Gata Transcription Factor Family AT3G24050 43.602 7.43e-44 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mal6g0371 GATA 1.6e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0371 - - mtr:MTR_5g007600 357.066