Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0370 ATGAAGACCCTGAACGAGGCTTATACATGTAAGTTAGCTTGGCAAATGGTGGTCAATCCTGAGAAGTTGTGGGTTCAAGCCATGAAAGCTAAGTATAAATGTGGATTCAAGGATGGAGATACCACTAGATTTTGGAAAGACACTTGGATCCCTGGATATACAAATCTGGAAGAACAATTTGGTCGTCTTGTACCTCCTAATGAAATTAATTACCTTGTAGCATTTTATGGTAATAACATGGGGTGGAATTGGGAGAGAATTTGCAGACATATTCCTATGTATATGAAGGAAGCTATTGATCTGGTTCAACCTCCTTCTCCTGGAGGATCAAATGTTCCCTATTGGAATCTAGCTTCAAATGGAGAATTTTCTATAAAAACGGCATATGAAATGTTGAGTAATGCAAATAATACAGAGGACAACCTAAACCCGCTATTTGACAAAGTTTGGAAGTGGCAGGGTCCAGCTAGAATTAGAGCCACTTTGTGGAAAATTGCTCATGGAAGACTTCTTACAAATGAAGAAAGAGTCAGAAGATGCATGACTTCTGATATTGAGTGTGGTAGATGTATGGAAGTTCCAGAATCGATTTTACATATTTTGAGAGATTGTGAAGATACCAAGGAGCTCTGGTCCAGGGTCATAAAAGAAGAACATTGGAGGATGGAGGCCGTTGATTCTATAGAGAACCTATGGGATTGCTTATCTGACATAGGTGAGGATGACAAACCTAAGGAAGCCGCCTTTCCTTCACTTAATCCATTGGACCTGGATGATTCCAACCATTCATTTTATGAGTTTGTAGAAGAGGAGCTTGAATGGATATCCAACAAAGATGCATTTCCAGCTGTTGAAACATTTGTTGACATGTTCTGTATTCAACCGGATATTTCGAAGTATCAAAAGATAGCACCACCAATGCTCGAGAACAGCACAAGCAGTAGCAACAGAAATAACAGTTCCGACAGCCTTACCCTCTTAAGTGGTGACAATCAAATGAAGTTCCCTGTCCGTGCACGGAGCAAGTCTCGTACTAGGCCTCGCCTTGGCATTTCTGAAACCTGGAACCATCAATTCGCGTGGAAACAACCGAATAACAAAAATTCCAAAGAACAAGCGAAACAAACCTCAACCATTGGGAGGAAATGTCATCACTGTGGAGCTGATAATACTCCGCTATGGCGGTTAGGTCCCAATGGTCCAAAAACACTCTGTAATGCATGTGGGGTTAGGTATAGATCTGGCCGACTTGTACCTGAATACCGCCCTGCAAATAGCCCAACTTTTTGCAGCGGCGTGCATTCTAATTCCCACAGGAAAGTAGTGCAAATGAGGAAGCAGAAGGGAATGGGAATGAGTTGA 1362 0.4178 MKTLNEAYTCKLAWQMVVNPEKLWVQAMKAKYKCGFKDGDTTRFWKDTWIPGYTNLEEQFGRLVPPNEINYLVAFYGNNMGWNWERICRHIPMYMKEAIDLVQPPSPGGSNVPYWNLASNGEFSIKTAYEMLSNANNTEDNLNPLFDKVWKWQGPARIRATLWKIAHGRLLTNEERVRRCMTSDIECGRCMEVPESILHILRDCEDTKELWSRVIKEEHWRMEAVDSIENLWDCLSDIGEDDKPKEAAFPSLNPLDLDDSNHSFYEFVEEELEWISNKDAFPAVETFVDMFCIQPDISKYQKIAPPMLENSTSSSNRNNSSDSLTLLSGDNQMKFPVRARSKSRTRPRLGISETWNHQFAWKQPNNKNSKEQAKQTSTIGRKCHHCGADNTPLWRLGPNGPKTLCNACGVRYRSGRLVPEYRPANSPTFCSGVHSNSHRKVVQMRKQKGMGMS* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0370 453 Pfam GATA zinc finger 383 416 IPR000679 GO:0006355|GO:0043565
Mal6g0370 453 Gene3D - 377 427 IPR013088 GO:0006355|GO:0008270
Mal6g0370 453 MobiDBLite consensus disorder prediction 308 328 - -
Mal6g0370 453 ProSitePatterns GATA-type zinc finger domain. 383 408 IPR000679 GO:0006355|GO:0043565
Mal6g0370 453 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 379 440 - -
Mal6g0370 453 ProSiteProfiles GATA-type zinc finger domain profile. 377 413 IPR000679 GO:0006355|GO:0043565
Mal6g0370 453 PANTHER GATA TRANSCRIPTION FACTOR 260 448 - -
Mal6g0370 453 PANTHER GATA TRANSCRIPTION FACTOR 1 260 448 - -
Mal6g0370 453 Pfam zinc-binding in reverse transcriptase 123 211 IPR026960 -
Mal6g0370 453 SMART GATA_3 377 427 IPR000679 GO:0006355|GO:0043565
Mal6g0370 453 CDD ZnF_GATA 382 439 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0370 Mal-Chr6 4881489 4887485 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0370 269 447 C2C2-Gata Transcription Factor Family AT3G24050 44.550 1.06e-40 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mal6g0370 zf-RVT 8.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0370 - - mtr:MTR_5g007600 349.362