Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0328 ATGATACTGTTTGGTGCAAAAAATAACTTCACTACATTGATGCTGCAATCCAAAAAACTTATACACCATGTATTCCCCAAATTTTGTATATTGCAAAATCTTCACACTTCAACTGCACAATCAGAAACCATAGCCAGAAACGTAAACACACAAATACACACTCTTTCATTACAAGGAAACCTTGAAAAAGCACTTTCACTTGTTTACACTCACCCTTCTCTCTCCCTCCAAGACTATGCATTTCTTTTCCATGCTTGTGCTCAGAAAAAATGCATCCAACAAGGCATGGCATTGCATCATTACATACTTAACAAACACCCCACAATTCAAAATGATGTTTTTCTTACTAATAACCTCTTAAACATGTACTGCAAGTGTGGTTATTTAGATTATGCGCGCTACCTGTTTGATCAAATGCCGAAGAGAAATTTTGTTTCTTGGACTGTTCTTATTTCTGGTTATGCTCAGTTAGGTTTAATCAGAGAGTGTTTCGCTTTATTCTCTGGTATGTTGGCTTGTTTTCGGCCCAATGAATTTTCTTTTGCGAGTGTGCTTAGTGCTTGTGAGAAGCGTGATTTCAAATATGGCTTGCAGGTGCATGCTGTTGCTTTGAAAATGTCGTTGGATGTTAATGTATATGTTGCAAATGCTCTTATTACAATGTATAGTAAGTGCTCTGGTGGTTTTGGCGGAGGTTGTGATCAAATGTCGGATGATGCGTGGACTGTGTTCGAGTCGATGGAGTATAGAAATCTTATATCTTGGAATTCGATGATTTCAGGTTTTCAATTCCGTGGACTTGGGGACAAAGCTATTGGCCTGTTTGCGCATATGTATTGCAATGGAATTGGGTTTAACAGTGCCACGTTACTCGGTGTTTTATCTTCTTTGAATCATTGCTCGAATACTTTGGATGACATCAACAACACACATCATCTGAAGAACTGTTTTCAATTACACTGTCTCACAATTAAAAGTGGTCTTATTTCAGAAGTTGAAGTGTTAACTGCATTGGTAAAATCTTATGCAGACCTAGGGGGTCACACTTCTGACTGTTTTAAGCTCTTCCATGATACAAGTGGCGAACATGATATTGTGTCATGGACTGCTATTATTTCTGTGTTTGCGGAGCGCGATCCTGAGCATGCTTTCCTTCTTTTCTGTCAACTTCATCGAAAAAAATTTGTGTTGGACCGGCATACATTCTCAATTGCGTTAAAAGCTTGCGCGTACTTTGTCACTGAGAAAAATGCAACGGCAGTTCACTCACAAGTAATTAAACAAGGGTTTCAGGACGACACAGTTGTATCAAATGCCTTGATACATGCTTATGGGAGGTCTGGCTCCTTAGCTTTGTCTGAACAAGTATTTGACAAAATGTGTTGCCATGATTTGGTTTCATGGAATTCAATGCTCAAGTCTTATGCCATGCACGGTCGAGCTAAATATGCACTGGAGGTCTTCAAGCGAATGGATGTTCCTCCAGATTCTACAACCTTTGTTGCACTTCTCGCAGCATGCAGTCACGCTGGACTTGTTAAAGAAGGAGCGAAGATTTTCAACTCTATGACTGAAAGTCATGGTATTGCTCCTCAATTAGATCACTATGCCTGCATGGTTGACCTTTACGGACGAGCTGGAAAGATATTTGAGGCGGAGGAGTTGATACGGAAAATGCCAATGAAACCTGATTCTGTGATTTGGAGTTCATTACTTGGATCTTGCAGGAAGCATGGTGAGGCTGACTTGGCCAAATTGGCAGCCGGTAAATTTAAAGAGCTAGATCCTAAAAACTCGTTGGCGTACATACAAATGTCAAATATATATTCCTCTGGAGGTAGTTTTACTGAAGCTGGATTGATTCGGAAGGAAATGAGAGACTCTAAAGTGAGAAAAAGACCTGGATTAAGCTGGGTTGAGGTTGGGAAGCAGGTTCATGAATTCACATCTGGTAGCCAGCATCATCCGAAAAGGCAGGCCATATTGAGCCAGCTTGAGACATTGATCGGACAATTGAAAGAAATGGGCTATGCTCCAGAGATTAGCTCAGCCTTGCATGACATTGAAGTGGAGCACATAGAAGACCAATTGTTTCATCATAGTGAGAAGATGGCATTGGTATTTGCTATAATGAATGAAGGAACTTTGCCTTGTGGTGGAAATGTCATTAAAATAATGAAGAATATCCGTATTTGTGTGGATTGTCATAACTTTATGAAATTAGCATCAAAACTGTTTCAGAAGGAGATTGTCGTAAGAGATTCGAATCGCTTTCACCATTTCAAATATGCAACATGCTCTTGTAATGACTATTGGTAA 2319 0.3976 MILFGAKNNFTTLMLQSKKLIHHVFPKFCILQNLHTSTAQSETIARNVNTQIHTLSLQGNLEKALSLVYTHPSLSLQDYAFLFHACAQKKCIQQGMALHHYILNKHPTIQNDVFLTNNLLNMYCKCGYLDYARYLFDQMPKRNFVSWTVLISGYAQLGLIRECFALFSGMLACFRPNEFSFASVLSACEKRDFKYGLQVHAVALKMSLDVNVYVANALITMYSKCSGGFGGGCDQMSDDAWTVFESMEYRNLISWNSMISGFQFRGLGDKAIGLFAHMYCNGIGFNSATLLGVLSSLNHCSNTLDDINNTHHLKNCFQLHCLTIKSGLISEVEVLTALVKSYADLGGHTSDCFKLFHDTSGEHDIVSWTAIISVFAERDPEHAFLLFCQLHRKKFVLDRHTFSIALKACAYFVTEKNATAVHSQVIKQGFQDDTVVSNALIHAYGRSGSLALSEQVFDKMCCHDLVSWNSMLKSYAMHGRAKYALEVFKRMDVPPDSTTFVALLAACSHAGLVKEGAKIFNSMTESHGIAPQLDHYACMVDLYGRAGKIFEAEELIRKMPMKPDSVIWSSLLGSCRKHGEADLAKLAAGKFKELDPKNSLAYIQMSNIYSSGGSFTEAGLIRKEMRDSKVRKRPGLSWVEVGKQVHEFTSGSQHHPKRQAILSQLETLIGQLKEMGYAPEISSALHDIEVEHIEDQLFHHSEKMALVFAIMNEGTLPCGGNVIKIMKNIRICVDCHNFMKLASKLFQKEIVVRDSNRFHHFKYATCSCNDYW* 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0328 772 Pfam DYW family of nucleic acid deaminases 676 772 IPR032867 GO:0008270
Mal6g0328 772 SUPERFAMILY TPR-like 78 634 IPR011990 GO:0005515
Mal6g0328 772 Pfam PPR repeat 466 491 IPR002885 -
Mal6g0328 772 Pfam PPR repeat 437 462 IPR002885 -
Mal6g0328 772 Pfam PPR repeat 117 144 IPR002885 -
Mal6g0328 772 Pfam PPR repeat 499 526 IPR002885 -
Mal6g0328 772 Pfam PPR repeat 253 283 IPR002885 -
Mal6g0328 772 Pfam PPR repeat 145 171 IPR002885 -
Mal6g0328 772 Pfam PPR repeat 536 560 IPR002885 -
Mal6g0328 772 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 464 494 IPR002885 -
Mal6g0328 772 Gene3D Tetratricopeptide repeat domain 411 492 IPR011990 GO:0005515
Mal6g0328 772 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 496 531 IPR002885 -
Mal6g0328 772 TIGRFAM PPR: pentatricopeptide repeat domain 466 491 IPR002885 -
Mal6g0328 772 TIGRFAM PPR: pentatricopeptide repeat domain 438 465 IPR002885 -
Mal6g0328 772 TIGRFAM PPR: pentatricopeptide repeat domain 117 145 IPR002885 -
Mal6g0328 772 TIGRFAM PPR: pentatricopeptide repeat domain 145 172 IPR002885 -
Mal6g0328 772 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 112 146 IPR002885 -
Mal6g0328 772 Pfam E motif 578 640 IPR046848 -
Mal6g0328 772 PANTHER OS01G0913400 PROTEIN-RELATED 136 678 - -
Mal6g0328 772 PANTHER OS01G0913400 PROTEIN-RELATED 56 376 - -
Mal6g0328 772 Gene3D Tetratricopeptide repeat domain 45 190 IPR011990 GO:0005515
Mal6g0328 772 Gene3D Tetratricopeptide repeat domain 301 410 IPR011990 GO:0005515
Mal6g0328 772 Gene3D Tetratricopeptide repeat domain 493 667 IPR011990 GO:0005515
Mal6g0328 772 Gene3D Tetratricopeptide repeat domain 191 300 IPR011990 GO:0005515
Mal6g0328 772 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN DOT4, CHLOROPLASTIC-LIKE 136 678 - -
Mal6g0328 772 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN DOT4, CHLOROPLASTIC-LIKE 56 376 - -
Mal6g0328 772 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 251 285 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0328 Mal-Chr6 4456288 4458606 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0328 79 772 Glycoside Hydrolase AT3G49170 35.361 5.59e-133 413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g0328 6 4456288 4458606 Mal1g0793 1 9478536 9484389 PCT