Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0319 ATGGAAGAATCTAACAGCATGCAAGAGCAAGGACATGTAAATGTTACTCCTCCTCCAACACCAACAACATCCTATATAGGAGTTAGGAAGAGAAAATGGGGGAAGTTTGTATCAGAAATAAGGGAGCCAGGGAAGAAGAGCAGAATTTGGTTAGGGAGCTATGAAGAACCACAAATGGCAGCAGCAGCATATGATATAGCAGCTTTTCACCTCAAAGGACGCGCCGCGAGGCTCAATTTTCCTGATATGATTGAGAAACTTCCAATGCCAGCAAGCTCAAAAGCAGAGGATATTCGTGTGGCAGCTCAACAAGCAGCATTGCAGTTCAAGAGGAGATCATCATCATCATCATCATCATCCGAAGGGGGTGTCAATAGCAATAGCAATAATGGCAGTGTTGTTCCTGATGTGAGGGTAGGGCTTTCACCTTCTCAAATTCAAGCAATCAATGAGGCTCCTTTGGATTCACCTAAGATGTGGATGCAAATGTACGGATTTGAATTTGATGAATCTAGGAATTATGATAATAATGTTTTAGAGTTGAGTGAATGGGAAGAAATTCAGTATGAGTCATTGTGGGACTAA 585 0.4205 MEESNSMQEQGHVNVTPPPTPTTSYIGVRKRKWGKFVSEIREPGKKSRIWLGSYEEPQMAAAAYDIAAFHLKGRAARLNFPDMIEKLPMPASSKAEDIRVAAQQAALQFKRRSSSSSSSSEGGVNSNSNNGSVVPDVRVGLSPSQIQAINEAPLDSPKMWMQMYGFEFDESRNYDNNVLELSEWEEIQYESLWD* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0319 194 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Mal6g0319 194 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Mal6g0319 194 PRINTS Ethylene responsive element binding protein signature 63 83 IPR001471 GO:0003700|GO:0006355
Mal6g0319 194 Gene3D AP2/ERF domain 24 82 IPR036955 GO:0003700|GO:0006355
Mal6g0319 194 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF022 2 193 - -
Mal6g0319 194 MobiDBLite consensus disorder prediction 1 23 - -
Mal6g0319 194 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 2 193 - -
Mal6g0319 194 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Mal6g0319 194 MobiDBLite consensus disorder prediction 1 26 - -
Mal6g0319 194 CDD AP2 25 82 IPR001471 GO:0003700|GO:0006355
Mal6g0319 194 MobiDBLite consensus disorder prediction 109 137 - -
Mal6g0319 194 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Mal6g0319 194 MobiDBLite consensus disorder prediction 109 135 - -
Mal6g0319 194 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0319 Mal-Chr6 4368076 4368660 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0319 23 194 AP2-EREBP Transcription Factor Family AT1G71450 47.159 1.65e-49 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal6g0319 AP2 1.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0319 - - cam:101493379 261.922