Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0316 ATGTCTTCAAGTGGTGCTGCTAGTTCTGCATACAGAGGAGTCCGCAAGAGGAAATGGGGAAAGTGGGTTTCCGAAATCCGCGAGCCGGGAACCAAAACAAGAATATGGTTGGGAAGCTTCGAGACACCGGAGATGGCAGCAGCTGCATACGACGTTGCTGCCTTGCATTTTCGGGGACGGGAAGCCAGGCTCAATTTCCCTGAACTCGCAACCACTCTTCCTCATCCTTTAAGCAACAATGCTGACCACATTCGAATGGCAGCACACGAGGCCGCCTTGAGACTCAGAGCCAACATGCTGGTGCCACCAGATAATAACAGTGGAACAGGCTCAGCCAGTTCCACTGATGTGGTGGCGCCTCTGACTGTGAGACTCTCTCCGAGTCAAATTCAAGCGATTAATGATTCGCCTATGGATTCACCTCCTACATGGATGCAAATGTCACACCCCTTTATGATGGATGATCAAACCGTGTTGTTTGGTAATAATGGATACGGCTATGAATTTGATGAGAACGAATGGGAGGATATGCAACACACTGATTATCTTTGGGATCCTTGA 561 0.492 MSSSGAASSAYRGVRKRKWGKWVSEIREPGTKTRIWLGSFETPEMAAAAYDVAALHFRGREARLNFPELATTLPHPLSNNADHIRMAAHEAALRLRANMLVPPDNNSGTGSASSTDVVAPLTVRLSPSQIQAINDSPMDSPPTWMQMSHPFMMDDQTVLFGNNGYGYEFDENEWEDMQHTDYLWDP* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0316 186 Gene3D AP2/ERF domain 10 68 IPR036955 GO:0003700|GO:0006355
Mal6g0316 186 CDD AP2 11 69 IPR001471 GO:0003700|GO:0006355
Mal6g0316 186 Pfam AP2 domain 10 59 IPR001471 GO:0003700|GO:0006355
Mal6g0316 186 SMART rav1_2 10 73 IPR001471 GO:0003700|GO:0006355
Mal6g0316 186 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF021 3 185 - -
Mal6g0316 186 ProSiteProfiles AP2/ERF domain profile. 10 67 IPR001471 GO:0003700|GO:0006355
Mal6g0316 186 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 3 185 - -
Mal6g0316 186 SUPERFAMILY DNA-binding domain 9 68 IPR016177 GO:0003677
Mal6g0316 186 PRINTS Ethylene responsive element binding protein signature 33 49 IPR001471 GO:0003700|GO:0006355
Mal6g0316 186 PRINTS Ethylene responsive element binding protein signature 11 22 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0316 Mal-Chr6 4279868 4280428 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0316 9 186 AP2-EREBP Transcription Factor Family AT1G71450 57.377 5.89e-63 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mal6g0316 AP2 3.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0316 - - aprc:113869810 283.108