Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0306 ATGAATTGGTCTACTTCAACAACAAGCACAAGTGATGAAAACAACAAGAAATTTAAGGGAATTAGGCGTAGAAAGTGGGGAAAATGGGTATCAGAGATTCGTGTTCCAGGGACTCAAGAACGTTTATGGTTGGGAACTTATGCTACACCGGAAGCTGCTGCGGTGGCACACGACATAGCTGTTTATTGTTTAAAGAGACCTTCTACTTTGGACAAACTCAACTTTCCTGAGATTTTGTCTTCTTATGGTATTCAACAAAGAGATAATTTGATGTCTCCGAGGTCTGTTCAGAAGGTTGCTTCTGATGTTGCAATGGATGTTGATGCACGAAAGATTGCAAGCCAAGCAATAACTTTGCCAGAAACTCATCACATGAATAATGTTGTTGCTGATGATGTGTTTTGGTGGGAAGGTTTGGGTGATGAACAAGGAGTTACTCATGTTTCTAGCCAACAACAAGAGAGCTTGAACATTTCCATTGAAGATTATCTTTAG 495 0.4 MNWSTSTTSTSDENNKKFKGIRRRKWGKWVSEIRVPGTQERLWLGTYATPEAAAVAHDIAVYCLKRPSTLDKLNFPEILSSYGIQQRDNLMSPRSVQKVASDVAMDVDARKIASQAITLPETHHMNNVVADDVFWWEGLGDEQGVTHVSSQQQESLNISIEDYL* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0306 164 CDD AP2 16 77 IPR001471 GO:0003700|GO:0006355
Mal6g0306 164 ProSiteProfiles AP2/ERF domain profile. 17 76 IPR001471 GO:0003700|GO:0006355
Mal6g0306 164 SUPERFAMILY DNA-binding domain 17 76 IPR016177 GO:0003677
Mal6g0306 164 SMART rav1_2 17 82 IPR001471 GO:0003700|GO:0006355
Mal6g0306 164 Pfam AP2 domain 17 65 IPR001471 GO:0003700|GO:0006355
Mal6g0306 164 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Mal6g0306 164 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Mal6g0306 164 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF020 5 161 - -
Mal6g0306 164 Gene3D AP2/ERF domain 16 78 IPR036955 GO:0003700|GO:0006355
Mal6g0306 164 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0306 Mal-Chr6 4157000 4157494 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0306 10 164 AP2-EREBP Transcription Factor Family AT1G22810 44.516 7.47e-43 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal6g0306 AP2 5.3e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0306 - - mtr:MTR_5g008790 291.197