Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0301 ATGGGGTGCATTTGCTCAAAATACTCTTCAAAGAAAAACAAAGTTGAAGAATTTGAGAAAGAAAGTGAGTGGAATAAGTCTTCAGTGCAATTAGTTGCTCCTGCACAGTTAAATGGGGTTAGCATTGGCATTGCCTTGGATGGTTGTAATTCAACGCCGCGTTTGGCTAAGGCGGCGTCGCAAGTGTTTAGAAGAGCAGAAGAGAAAAACAATCACTTAGGTGCTGGTAACAAAAGTCAGCATCATAGATGTATGACATTAACTTCTGGTGTAGGTGAAAGAAAGCCAGTAATGAGTAGAATACTCAGTGTGCAAAATTTCGCAGGAGAACAATATGTTGATTCTGGATGGCCATCATGGTTGTCTTCAGTTGCAGCAGAAGCTATCAAAGGTTGGGTTCCTAGAAGGGCTGACTCTTTTGAAAAATTAGACCAAATTGGACAAGGGGCTTATAGCAGTGTGCATAAAGCTCGTGATCTTGAAACTGGTAAATATGTGGCTTTGAAGAAAGTTAGGTTTTCAAGCGGAGATGTTGAAAGTGTCCGTTTCATGGCAAGGGAAATCTATATTTTGCGTCAACTTGACCATCCTAACATCCTCAAACTTGAAGGTCTTGTCACATCTAGAACTTCAACTAGCTTGTACCTTGTTTTTGAATACATGGATCATGACCTTGCTGGACTAGCAGCTAGACCTGGTGTAAAGTTCACTGAACCACAGATAAAATGTTACATGAAGCAACTGCTATGTGGGCTAGAACACTGTCACAGTAGGGGTGTGTTGCACCGCGACATCAAGGGTTCTAATCTTCTAGTTGACAACAATGGAAATCTTAAGATTGGAGATTTTGGTCTAGCAACTGTTTATGACCCTAATAGCAAGGTGCCATTGACAAGCCGTGTTGTGACTCTTTGGTATAGGGCACCTGAACTTTTGCTAGGTGCTACCGACTATGGTGCTGCGATTGACATGTGGAGTGCTGGTTGTATTCTAGCTGAATTGTTGGTAGGCAAGCCTATCATGCCTGGAAGGACAGAGGTGGAACAAATGCACAAGATTTTTAAGCTTTGTGGTTCAGCATCTGAAGACTATTGGAAAAGAACAAAAAAACTTCCATATGCAACAAGTTTTAAACCACAAAACTCTTACAAACGACAAGTCGCTGATACATTTAAAAACTTTCCTTCTACTGCATTAGCACTTGTTGATAAGCTCCTTTCAATGGAACCAGAACAACGAGGATCTGCAACTTCTGCACTTCAGAGTGAGTTCTTCACTACAGATCCTCTACCTTGTGAGCCTTCAAGTCTACCAAAATTTCCACCAAGCAAGGAGTTCGATGTCAGGCGTCGAGAAAAAGAAGCAATAAGAAAAAATACTGAGGCTATTAAAGGACATGGACCAGTAACGGTTTTAAGGGGAGCAAGAAATACCAAAGCATTGGAAACACCAGAGTATAACGCTAAAGGAGATATATTGTTGCGGGGCAAGTCAAATACTAGAATACAAGAAGATGATGATTCTAACAACAATTGCGAACCAAGTAGAGTATCTATGCATAATGGCTATACACATTCAACAGCATCGATGCTCAGCAATACCAATAAGAGACCAGATTCATCTACGAAGAATATTCCAGAGTTAAGGACACAAAGGTCTCATTTGAATCAAGCAGCGGTAGACTTCTCTGTTTCGATTAAAAAGGAACAAGGCATGTCAGGCCAAGACACCGGAATGGGTTACATACCTAAGAAAAATAGAATCCATTGTTCTGGACCATTGATGCCAGCAGGTGGCAACATTGATGACATGCTTAGAGAGCATGAACGGTTAATGCAAGATGTTTTTCGTAGTGTCAAGAAGGCTAATCCATGA 1875 0.4107 MGCICSKYSSKKNKVEEFEKESEWNKSSVQLVAPAQLNGVSIGIALDGCNSTPRLAKAASQVFRRAEEKNNHLGAGNKSQHHRCMTLTSGVGERKPVMSRILSVQNFAGEQYVDSGWPSWLSSVAAEAIKGWVPRRADSFEKLDQIGQGAYSSVHKARDLETGKYVALKKVRFSSGDVESVRFMAREIYILRQLDHPNILKLEGLVTSRTSTSLYLVFEYMDHDLAGLAARPGVKFTEPQIKCYMKQLLCGLEHCHSRGVLHRDIKGSNLLVDNNGNLKIGDFGLATVYDPNSKVPLTSRVVTLWYRAPELLLGATDYGAAIDMWSAGCILAELLVGKPIMPGRTEVEQMHKIFKLCGSASEDYWKRTKKLPYATSFKPQNSYKRQVADTFKNFPSTALALVDKLLSMEPEQRGSATSALQSEFFTTDPLPCEPSSLPKFPPSKEFDVRRREKEAIRKNTEAIKGHGPVTVLRGARNTKALETPEYNAKGDILLRGKSNTRIQEDDDSNNNCEPSRVSMHNGYTHSTASMLSNTNKRPDSSTKNIPELRTQRSHLNQAAVDFSVSIKKEQGMSGQDTGMGYIPKKNRIHCSGPLMPAGGNIDDMLREHERLMQDVFRSVKKANP* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0301 624 SMART serkin_6 140 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal6g0301 624 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 82 619 - -
Mal6g0301 624 PANTHER CELL DIVISION PROTEIN KINASE 82 619 - -
Mal6g0301 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
Mal6g0301 624 Gene3D Phosphorylase Kinase; domain 1 127 222 - -
Mal6g0301 624 ProSitePatterns Protein kinases ATP-binding region signature. 146 169 IPR017441 GO:0005524
Mal6g0301 624 Pfam Protein kinase domain 140 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal6g0301 624 SUPERFAMILY Protein kinase-like (PK-like) 133 432 IPR011009 -
Mal6g0301 624 Gene3D Transferase(Phosphotransferase) domain 1 223 465 - -
Mal6g0301 624 ProSiteProfiles Protein kinase domain profile. 140 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal6g0301 624 CDD STKc_CDK9_like 140 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0301 Mal-Chr6 4127257 4131003 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0301 132 464 Core Cell Cycle Gene Families AT5G10270 52.874 8.27e-124 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Mal6g0301 Pkinase 4.4e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0301 K08819 - gmx:100791743 891.723