Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0299 ATGCAAGGAAGCGCCGCCGACGGAGAAGCTTTGGATTTCGAGCCGGAGGAGGATGACTTGATGGACGAAGAAGGTGCTGTTGACGCCGAAGCTTCTCCTCCTCACCCCAAAATCAAATCCGCCATCACCGCTTCCACCCTCGCCGTTCCCAAAAAAACCAAAGGTCGCGGTTTCCGTCAGGATTCCGATTCCTCCAACCGTAACTCTCGTCTTGCTGATTCCGGTTTTGATACTCTAACTGCTGAGGGTGGTCCCGGTCCTCAAAGATCTATTGAAGGATGGATTATTTTGGTGACTGGTGTTCATGAAGAAGCTCAAGATGATGATTTGCAGAATGCTTTTGGTGAATATGGAGATATTAAGAATCTTCACTTGAATCTTGATCGCCGTACTGGTTTTGTTAAGGGTTATGCACTGATTGAATATGAGCGCTCTGAGGAAGCTCGGAATGCAATAGAGAATTTGAATGGATCTGTGCTTCTCACACAAACCATTTATGTTGATTGGGCTTTCAGCAGTGGACCTATTAACGAACCACCTCAGCGGCGCTCCAGGAGTCCTAGGAGGAGATATTGA 576 0.4757 MQGSAADGEALDFEPEEDDLMDEEGAVDAEASPPHPKIKSAITASTLAVPKKTKGRGFRQDSDSSNRNSRLADSGFDTLTAEGGPGPQRSIEGWIILVTGVHEEAQDDDLQNAFGEYGDIKNLHLNLDRRTGFVKGYALIEYERSEEARNAIENLNGSVLLTQTIYVDWAFSSGPINEPPQRRSRSPRRRY* 192
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0299 191 CDD RRM_RBM8 88 175 IPR033744 GO:0003729
Mal6g0299 191 SUPERFAMILY RNA-binding domain, RBD 87 190 IPR035979 GO:0003676
Mal6g0299 191 SMART rrm1_1 95 168 IPR000504 GO:0003723
Mal6g0299 191 MobiDBLite consensus disorder prediction 10 26 - -
Mal6g0299 191 PANTHER RNA-BINDING PROTEIN Y14A-LIKE 2 189 - -
Mal6g0299 191 Gene3D - 11 183 IPR012677 -
Mal6g0299 191 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 165 IPR000504 GO:0003723
Mal6g0299 191 PANTHER RNA-BINDING PROTEIN 8A 2 189 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Mal6g0299 191 PRINTS RNA binding motif protein 8 family signature 159 171 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Mal6g0299 191 PRINTS RNA binding motif protein 8 family signature 85 99 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Mal6g0299 191 PRINTS RNA binding motif protein 8 family signature 141 157 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Mal6g0299 191 PRINTS RNA binding motif protein 8 family signature 47 59 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Mal6g0299 191 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 172 IPR000504 GO:0003723
Mal6g0299 191 MobiDBLite consensus disorder prediction 1 87 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Mal6g0299 Mal-Chr6 4101852 4105062 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0299 96 170 Eukaryotic Initiation Factors Gene Family AT4G34110 37.333 3.43e-08 50.8
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0299 K12876 - gmx:100778595 305.449