Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0255 ATGACTACAAACAAAAACACACACCGTCTCAACCTTACAAAAGAAAACACTACTCCAAACAAACCATTTCCGAAAATTGTAAGAATCACCGTCACGGACAAAGATGCTACCGACTGTTCCAGCGACGAAGATTCAACCACGCGCTTCTTAAAACGTAACCGACCTAAAAAGTTTGTTAACGAGATTATCATTGAGCCATGCGTGAGTGAGAATAACACCAGTACCGTTTCCAGGAAGAGAAACCGAAACAGAAAAAGAACCACCGCCGGCGGAGGAAAAACAAGCGCTCCGGCGAAGAAATACCGGGGAGTGAGGCAGAGACCGTGGGGAAAATGGGCTGCGGAGATAAGAGACCCGGCGCGTGGAGTGCGCGTGTGGCTTGGTACATTTCAAACTGCTGAAGAAGCTGCTATTGTCTACGACAACGCGGCTATTAAGTTGCGTGGACCAGACGCGCTAACTAATTTCATAACTCCACCTTCATCTGCCACGTGTCAGTTATCACCACCACCACCACTACCGGAAAATGAAAACGCTCCTCCACCTTCATTTCCGTTACCGGAAAATAGCAGTTACATTTCCGGTGAAGAATCTCAATCTCAATCTCAAAACAATAATAATAAGAGTTTATTTTCACCTACTTCAGTTCTTCAGTGTTGTTCATTCTCAGAAGAAGTAGCTGAATCTCAAAACAATGAGTCAATGTTTTCAATTCCAAGTGATATACAATTTGATTTTCAGGGTTCTTCACCAGCAAATGATGCATTCTACAACTTCAATGGCTTTTCAGATAGCATGTTCTACGGTGATATGGATTTTGAGTATTTTGATTTTGGTTTAGAAAGCTTGCAGCCAATTAAGGATGAAGATTTTTTTCAAGATATTGATGATTTATTTGCTTCAGATGCTCTTCTTGCTGTTTAA 924 0.4199 MTTNKNTHRLNLTKENTTPNKPFPKIVRITVTDKDATDCSSDEDSTTRFLKRNRPKKFVNEIIIEPCVSENNTSTVSRKRNRNRKRTTAGGGKTSAPAKKYRGVRQRPWGKWAAEIRDPARGVRVWLGTFQTAEEAAIVYDNAAIKLRGPDALTNFITPPSSATCQLSPPPPLPENENAPPPSFPLPENSSYISGEESQSQSQNNNNKSLFSPTSVLQCCSFSEEVAESQNNESMFSIPSDIQFDFQGSSPANDAFYNFNGFSDSMFYGDMDFEYFDFGLESLQPIKDEDFFQDIDDLFASDALLAV* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0255 307 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 2 302 - -
Mal6g0255 307 MobiDBLite consensus disorder prediction 158 207 - -
Mal6g0255 307 Pfam AP2 domain 100 149 IPR001471 GO:0003700|GO:0006355
Mal6g0255 307 MobiDBLite consensus disorder prediction 1 20 - -
Mal6g0255 307 PRINTS Ethylene responsive element binding protein signature 101 112 IPR001471 GO:0003700|GO:0006355
Mal6g0255 307 PRINTS Ethylene responsive element binding protein signature 123 139 IPR001471 GO:0003700|GO:0006355
Mal6g0255 307 SMART rav1_2 100 163 IPR001471 GO:0003700|GO:0006355
Mal6g0255 307 MobiDBLite consensus disorder prediction 72 106 - -
Mal6g0255 307 CDD AP2 99 156 IPR001471 GO:0003700|GO:0006355
Mal6g0255 307 MobiDBLite consensus disorder prediction 1 23 - -
Mal6g0255 307 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF2 2 302 - -
Mal6g0255 307 MobiDBLite consensus disorder prediction 188 207 - -
Mal6g0255 307 ProSiteProfiles AP2/ERF domain profile. 100 157 IPR001471 GO:0003700|GO:0006355
Mal6g0255 307 SUPERFAMILY DNA-binding domain 100 156 IPR016177 GO:0003677
Mal6g0255 307 Gene3D AP2/ERF domain 99 158 IPR036955 GO:0003700|GO:0006355
Mal6g0255 307 MobiDBLite consensus disorder prediction 164 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0255 Mal-Chr6 3522285 3523208 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0255 25 303 AP2-EREBP Transcription Factor Family AT4G27950 40.404 7.63e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal6g0255 AP2 4.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0255 - - mtr:MTR_5g009620 411.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g0255 6 3522285 3523208 Mal6g0255 6 3522285 3523208 ECH
Mal6g0255 6 3522285 3523208 Mal7g5009 7 119245809 119246792 PCT