Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0250 ATGTCTTCCGTTCCCATGAAGAATAAGAAACACACCACCAAACATGCTGAACCAGAAGAACCACAAACCCAACAAGAAGATTTCATGATCAAACCTGAAAAACTAACACCAACAATCGACACCTCAAACTGGCCCATACTCTTGAAAAACTACGACCGTCTCAATGTCCGTACCGGTCACTACACCCCCCTTCCCGCCGGTCACTCACCTCTCAAAAGACCCATTGAGGAATATCTCAAATATGGTGTTATCAATCTTGATAAGCCTGCTAATCCTTCTTCTCACGAGGTTGTTGCTTGGATCAAGCGAATTCTTCGTCGCGAGAAGACCGGTCATAGTGGTACTCTTGATCCTAAGGTTACTGGTAATTTGATTGTCTGTATTGACAGAGCAACCAGGCTGGTCAAGTCTCAACAAGGTGCTGGAAAAGAGTATGTTTGTATTGCTAGGCTTCATTCTGCTGTTCCTGATATTGCTAAGGTAGCTCGTGCTCTTGAAACTTTAACTGGTGCTGTTTTTCAAAGACCACCTTTGATTTCTGCTGTTAAAAGGCAACTTAGGATTAGAACTATTTATGAGAGTAAGATGCTTGAATATGATGCTGAGAAAAATTTACTTGTGTTTTGGATTTCGTGTGAGGCCGGTACTTATGTTAGGACTATGTGTGTTCATTTGGGTTTAGTTCTTGGTGTCGGTGCTCATATGCAAGAGCTTAGGAGGGTTAGGTCTGGAATTATGGGTGAGAAGGATAATATGGTTACTATGCATGATGTTATGGATGCTCAGCATGTTTTTGATACAAAGGAGAAGAACAATGAGGCTTATTTGAGGAGGGTTGTTATGCCTTTGGAGGTTCTTTTGACTAGTTATAAGAGGTTGGTTGTTAAGGATTCAGCTGTCAATGCTATTTGTTATGGTGCCAAGTTGATGATTCCGGGGTTGCTTAGGTTTGAGAATGATATTGAAACTGGTGAGGAGGTTGTGCTTATGACTACTAAGGGTGAAGCTATTGCCCTTGGTATTGCTGAGATGACTACTGCTGTTATGGCTACTTGTGATCATGGTGTTGTTGCTAAGATTAAGAGGGTGGTTATGGATCGGGATACTTATCCTAGGAAATGGGGTTTGGGTCCTAGGGCTTCTATGAAGAAGAAGCTGATCGCTGCTGGGAAGCTGGATAAGCATGGGAAGCCGAATGAGAGTACTCCTCAAGAGTGGATGAGGAACGTTGTTTTGCCTACTGGTGGGGACAGTGTGATTGCGAGTATGGCTGCTGCTACTGAAGATGGGAAGAAAGAGGTTGCTGATGAAGAGGGTGGGAAGGTTAAGAAGGATGAAGATGGTGAAGGGCGTAAGAGAAAGAAACAGGAAACTGCCGATAGCCCTGCTCCTGCTAAGAAGACCAAGAAAGTAGATGAAGCGGCTGTGGAGGTTGAAGATGAGAAGAAAGAAAAGAAGAAGAAAAAGAAGAAGGATAAAGAGAATGGAAATGTTGCATCTTCTGATGAGGAGAAGGTTGAAAAGGAGAAGAAGAAAAAGAAGGACAAGGAAAAGGGTAAAGATGGTTCTCCTCAAGTCGACAAGTCTGAGAAGAAGAAAAAGAAGCACAAGGAACAGAGTGAAGTAGGTTCGCCTGAAGTGGACAAGTCTGAGAAGAAGAAAAAGAAGAAAGACAAAGAAGCCAAAGATAATGCTGCAGAGATCAGTAACGGAAAGGATGAGAGCAATGCTGATAGAAGTGAAAAGAAGCACAAGAAAAAGAAAAACAAAGACGCCCAAGAAGAATAG 1788 0.4267 MSSVPMKNKKHTTKHAEPEEPQTQQEDFMIKPEKLTPTIDTSNWPILLKNYDRLNVRTGHYTPLPAGHSPLKRPIEEYLKYGVINLDKPANPSSHEVVAWIKRILRREKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDIAKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKMLEYDAEKNLLVFWISCEAGTYVRTMCVHLGLVLGVGAHMQELRRVRSGIMGEKDNMVTMHDVMDAQHVFDTKEKNNEAYLRRVVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIETGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIAAGKLDKHGKPNESTPQEWMRNVVLPTGGDSVIASMAAATEDGKKEVADEEGGKVKKDEDGEGRKRKKQETADSPAPAKKTKKVDEAAVEVEDEKKEKKKKKKKDKENGNVASSDEEKVEKEKKKKKDKEKGKDGSPQVDKSEKKKKKHKEQSEVGSPEVDKSEKKKKKKDKEAKDNAAEISNGKDESNADRSEKKHKKKKNKDAQEE* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0250 595 Pfam tRNA pseudouridylate synthase B C-terminal domain 219 287 IPR032819 -
Mal6g0250 595 ProSiteProfiles PUA domain profile. 290 365 - -
Mal6g0250 595 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 21 539 IPR004802 GO:0006396
Mal6g0250 595 MobiDBLite consensus disorder prediction 1 30 - -
Mal6g0250 595 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 4 21 539 - -
Mal6g0250 595 CDD PseudoU_synth_hDyskerin 80 262 - -
Mal6g0250 595 Pfam PUA domain 291 363 IPR002478 GO:0003723
Mal6g0250 595 MobiDBLite consensus disorder prediction 10 27 - -
Mal6g0250 595 Gene3D PUA domain 41 374 IPR036974 GO:0003723
Mal6g0250 595 Coils Coil 471 495 - -
Mal6g0250 595 MobiDBLite consensus disorder prediction 426 595 - -
Mal6g0250 595 Pfam DKCLD (NUC011) domain 41 98 IPR012960 -
Mal6g0250 595 MobiDBLite consensus disorder prediction 429 595 - -
Mal6g0250 595 SUPERFAMILY Pseudouridine synthase 41 288 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Mal6g0250 595 TIGRFAM unchar_dom_2: uncharacterized domain 2 286 362 IPR004521 GO:0003723
Mal6g0250 595 TIGRFAM CBF5: putative rRNA pseudouridine synthase 48 375 IPR004802 GO:0006396
Mal6g0250 595 SMART DKCLD_2 40 98 IPR012960 -
Mal6g0250 595 SMART pua_5 291 365 IPR002478 GO:0003723
Mal6g0250 595 Pfam TruB family pseudouridylate synthase (N terminal domain) 102 218 IPR002501 GO:0006396
Mal6g0250 595 Gene3D Pseudouridine synthase 74 282 - -
Mal6g0250 595 SUPERFAMILY PUA domain-like 290 371 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0250 Mal-Chr6 3479104 3480891 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0250 27 469 NAC Transcription Factor Family AT3G57150 82.619 0.0 730
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0250 K11131 - gmx:100806355 784.637