Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0235 ATGGGTAACCGTAGCAGCACCAAACCCAAACCGTCTTCCGATTCACAAACCCGTTCCAAATCAGAACCCTCACATCCCACTCCCACTTCCTTCCACCCTCCCAATCGAAACTCCACCCTCACCGCTTCCTCGTCTCCCCTGGGCCGCGTCTTAGGCAAGCCCATGGAAGACGTCCGATCCACCTACACCTTTGGCCGCGAACTCGGCCGCGGTCAATTCGGCGTAACATATCTAGTCACACACAAAACCACCAAAGAACAATTCGCCTGCAAATCAATCGCCACACGAAAGCTAATTCGCCGCGATGATTTGGATGATATTCGCCGTGAAGTTCAGATCATGCACCATCTCACCGGTCACCGGAACATTGTTGAGCTTAAAGGTGCTTACGAGGATCGGCATTCAGTTAACCTCATCATGGAGCTTTGTGCTGGTGGTGAGCTTTTTGATAGGATTATATCGAAAGGTCATTACTCTGAACGTGCTGCGGCTGAGCTGTGTCGCCAGATTGTGACTGTTGTTCATAATTGTCATACTATGGGTGTTATGCATAGGGATTTGAAGCCTGAGAATTTCTTGTTTCTTAGTAAGCATGAGAATTCGCCGCTTAAAGCCACCGATTTCGGTCTCTCCGTGTTTTTCAAGCCAGAAGATGTATTTAAAGATCTTGTTGGGAGTGCATATTATGTTGCTCCTGAGGTGTTGCGTAGAAGTTATGGACCTGAAGCTGATATTTGGAGTGCTGGCATTATTTTGTACATTCTCCTCTCTGGTGTTCCTCCCTTCTGGGCAGAAAATGAACAGGGTATCTTTGATGCTATTCTTCGTGGACATCTTGATTTCGCATCTGATCCTTGGCCTAAAATATCGAGTAGTGCTAAAGACCTGATCAAGAAGATGTTGCAAGCTGACCCTAAAGAACGAATTTCGGCTGTTGAAGTCCTTGATCATCCTTGGATGAAAGAAGATGGAGCATCCGATAAGCCTCTCGATATTGCTGTTTTAACTAGAATGAAACAATTCAGGGCAATGAACAAGCTAAAGAAAGTAGCTCTAAAGGTTATTGCTGAAAATCTTTCTGAAGAAGAAATTATTGGCTTGAAGGAAATGTTTAAATCCATGGACACAGATAACAGTGGAACAATCACTTTTGAAGAATTGAAAGCTGGTCTCCCCAAACTAGGTACTAAGATTTCCGAGTCTGAAGTAAGGCAGTTGATGGAAGCGGCTGATGTTGACGGAAATGGAACCATTGATTATATTGAATTTATAACAGCTACCATGCACTTGAATAGAATGGAAAAAGAGGACCACCTATACAAAGCTTTTGAATATTTTGACAAGGACAAAAGCGGGTACATCACAAAGGAAGAGTTGGAATCTGCCCTTAAAAAGTATAACATGGGTGATGAGAAAACAATAAAGGAGATCATTGACGAAGTTGATTCAGACAATGATGGAAGAATTAACTATGAGGAGTTTGTAGCCATGATGAGGAAAGGCAACCCAGACTTGATAACCAACAAACGACGCAAATGA 1539 0.4353 MGNRSSTKPKPSSDSQTRSKSEPSHPTPTSFHPPNRNSTLTASSSPLGRVLGKPMEDVRSTYTFGRELGRGQFGVTYLVTHKTTKEQFACKSIATRKLIRRDDLDDIRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMELCAGGELFDRIISKGHYSERAAAELCRQIVTVVHNCHTMGVMHRDLKPENFLFLSKHENSPLKATDFGLSVFFKPEDVFKDLVGSAYYVAPEVLRRSYGPEADIWSAGIILYILLSGVPPFWAENEQGIFDAILRGHLDFASDPWPKISSSAKDLIKKMLQADPKERISAVEVLDHPWMKEDGASDKPLDIAVLTRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNSGTITFEELKAGLPKLGTKISESEVRQLMEAADVDGNGTIDYIEFITATMHLNRMEKEDHLYKAFEYFDKDKSGYITKEELESALKKYNMGDEKTIKEIIDEVDSDNDGRINYEEFVAMMRKGNPDLITNKRRK* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0235 512 ProSiteProfiles EF-hand calcium-binding domain profile. 362 397 IPR002048 GO:0005509
Mal6g0235 512 ProSitePatterns EF-hand calcium-binding domain. 375 387 IPR018247 -
Mal6g0235 512 ProSitePatterns Protein kinases ATP-binding region signature. 68 91 IPR017441 GO:0005524
Mal6g0235 512 SUPERFAMILY EF-hand 358 499 IPR011992 -
Mal6g0235 512 SMART efh_1 438 466 IPR002048 GO:0005509
Mal6g0235 512 SMART efh_1 402 430 IPR002048 GO:0005509
Mal6g0235 512 SMART efh_1 366 394 IPR002048 GO:0005509
Mal6g0235 512 SMART efh_1 473 501 IPR002048 GO:0005509
Mal6g0235 512 ProSitePatterns Serine/Threonine protein kinases active-site signature. 182 194 IPR008271 GO:0004672|GO:0006468
Mal6g0235 512 ProSiteProfiles EF-hand calcium-binding domain profile. 398 433 IPR002048 GO:0005509
Mal6g0235 512 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 15 23 504 - -
Mal6g0235 512 CDD STKc_CAMK 62 319 - -
Mal6g0235 512 Pfam Protein kinase domain 62 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal6g0235 512 SMART serkin_6 62 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal6g0235 512 ProSiteProfiles EF-hand calcium-binding domain profile. 470 504 IPR002048 GO:0005509
Mal6g0235 512 ProSiteProfiles Protein kinase domain profile. 62 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal6g0235 512 Gene3D Phosphorylase Kinase; domain 1 64 147 - -
Mal6g0235 512 Gene3D - 328 502 - -
Mal6g0235 512 PANTHER SERINE/THREONINE-PROTEIN KINASE 23 504 - -
Mal6g0235 512 Gene3D Transferase(Phosphotransferase) domain 1 148 327 - -
Mal6g0235 512 MobiDBLite consensus disorder prediction 1 46 - -
Mal6g0235 512 SUPERFAMILY Protein kinase-like (PK-like) 59 331 IPR011009 -
Mal6g0235 512 ProSitePatterns EF-hand calcium-binding domain. 447 459 IPR018247 -
Mal6g0235 512 ProSitePatterns EF-hand calcium-binding domain. 482 494 IPR018247 -
Mal6g0235 512 Pfam EF-hand domain pair 437 499 IPR002048 GO:0005509
Mal6g0235 512 Pfam EF-hand domain pair 367 427 IPR002048 GO:0005509
Mal6g0235 512 ProSitePatterns EF-hand calcium-binding domain. 411 423 IPR018247 -
Mal6g0235 512 ProSiteProfiles EF-hand calcium-binding domain profile. 434 469 IPR002048 GO:0005509
Mal6g0235 512 MobiDBLite consensus disorder prediction 1 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0235 Mal-Chr6 3352751 3358667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0235 48 511 EF-hand Containing Proteins AT4G23650 80.000 0.0 809
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Mal6g0235 Pkinase 5e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0235 K13412 - gmx:100817321 878.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g0235 6 3352751 3358667 Mal6g0235 6 3352751 3358667 ECH
Mal6g0235 6 3352751 3358667 Mal7g4999 7 119063641 119068116 PCT