Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0229 ATGGCTCAAGAACTTGAAAACAAAGCCAAAGAAGCTTTTTTCGATGACGATTTTACCCTCGCCGTTGATCTCTACTCTCAAGCCATCGAAATCGATCCCACCAACGCGAATCTCTTCGCCGATAGAGCTCAATCTCATCTCAAACTCAACGCTTTCACTGAAGCTGTTTCTGATGCTAATAAAGCTATTCAATTAAACCCTAATTTGTCTAAATCTTATCTTCGCAAAGGGACGGCTTGTATTAATCTTGAAGAATATCATACTGCTAAGATTGCACTTGAAAAGGGTGCTTCTTTTGCACCTGATGATTCCAGATTCACTAATTTGATTCAACAATGTCAACGCTTCATTGCTGCTGAGGAATCAGAAAGTCTTACTAGCACCCTACCACCAAATGGACCCAAAACATCTGTACCATCTGTTGATGATACCCATATGTATGATAAGAGTGATGAAACATCCAAACAACCTCAAAGAGATGGTCCCGCGCCCCAAACAAATGCAGCTGCACCAATCAGACCAAAATACAGGCATGAATATTACCAGAAGCCAGAAGAAGTGGTTGTGACAATATTTGCAAAAGGGATACCAGCAGAAAATGTTGTTGTGGACTTCGGTGAACAAATTCTGAGCGTTACCATTGATGTTCCTGGCCAAGATGCCTATCATTACCAACCTCGATTGTTTGGAAAGATAGTGACTGATAAGTGCAAAGTTGTGGTTTTGTCAACCAAAATTGAAATACGTCTGGCAAAAGCTGAAGCAATTAATTGGACATCTCTGGAATATAGCAAGGATGTGCTTCCCCAAAAGATAATCGTGCCTACAGTTCAATCTGAAAGGCCTGCATATCCGTCATCAAAGTCAAGGACTAAGGATTGGGATAAGTTGGAAGCTGAAGTGAAAAAAGAGGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGTGATATTTACCAAAATGCAGATGAGGACATGAGGAGAGCGATGAGCAAGTCTTTTCTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAAAGAAGGTGGAAGGAAGTCCTCCAGAAGGCATGGAGGTGAAGAAATGGGAATATTGA 1125 0.4107 MAQELENKAKEAFFDDDFTLAVDLYSQAIEIDPTNANLFADRAQSHLKLNAFTEAVSDANKAIQLNPNLSKSYLRKGTACINLEEYHTAKIALEKGASFAPDDSRFTNLIQQCQRFIAAEESESLTSTLPPNGPKTSVPSVDDTHMYDKSDETSKQPQRDGPAPQTNAAAPIRPKYRHEYYQKPEEVVVTIFAKGIPAENVVVDFGEQILSVTIDVPGQDAYHYQPRLFGKIVTDKCKVVVLSTKIEIRLAKAEAINWTSLEYSKDVLPQKIIVPTVQSERPAYPSSKSRTKDWDKLEAEVKKEEKEEKLDGDAALNKLFRDIYQNADEDMRRAMSKSFLESNGTVLSTDWKEVGSKKVEGSPPEGMEVKKWEY* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0229 374 MobiDBLite consensus disorder prediction 122 139 - -
Mal6g0229 374 CDD p23_CS_SGT1_like 179 262 - -
Mal6g0229 374 Pfam CS domain 177 252 IPR007052 -
Mal6g0229 374 Gene3D - 174 265 IPR008978 -
Mal6g0229 374 SUPERFAMILY TPR-like 2 114 IPR011990 GO:0005515
Mal6g0229 374 Pfam Tetratricopeptide repeat 39 68 IPR019734 GO:0005515
Mal6g0229 374 Pfam Tetratricopeptide repeat 71 103 IPR019734 GO:0005515
Mal6g0229 374 PANTHER PROTEIN SGT1 HOMOLOG 1 374 IPR044563 GO:0051087
Mal6g0229 374 MobiDBLite consensus disorder prediction 355 374 - -
Mal6g0229 374 ProSiteProfiles CS domain profile. 173 262 IPR007052 -
Mal6g0229 374 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Mal6g0229 374 Gene3D Tetratricopeptide repeat domain 1 128 IPR011990 GO:0005515
Mal6g0229 374 SUPERFAMILY HSP20-like chaperones 167 268 IPR008978 -
Mal6g0229 374 MobiDBLite consensus disorder prediction 122 175 - -
Mal6g0229 374 PANTHER PROTEIN SGT1 HOMOLOG A 1 374 - -
Mal6g0229 374 Pfam SGS domain 292 372 IPR007699 -
Mal6g0229 374 ProSiteProfiles SGS domain profile. 283 374 IPR007699 -
Mal6g0229 374 MobiDBLite consensus disorder prediction 142 156 - -
Mal6g0229 374 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Mal6g0229 374 SMART tpr_5 36 69 IPR019734 GO:0005515
Mal6g0229 374 SMART tpr_5 70 103 IPR019734 GO:0005515
Mal6g0229 374 SMART tpr_5 2 35 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0229 Mal-Chr6 3297964 3301966 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0229 1 108 U-box Gene Family AT3G07370 29.630 8.63e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0229 K12795 - gmx:100784022 563.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g0229 6 3297964 3301966 Mal6g0229 6 3297964 3301966 ECH