Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0223 ATGGGTCACCATTCATGCTGCAATCAACAGAAGGTTAAGAGAGGACTTTGGTCACCTGAAGAAGATGAAAAACTCATTAGATACATTACAACTCATGGCTATGGATGCTGGAGTGAAGTTCCTGAGAAAGCTGGGCTTCAAAGGTGTGGTAAGAGTTGTAGGTTGAGATGGATAAATTATTTGAGGCCTGATATTAGAAGAGGAAGGTTTACACCTGAGGAGGAGAAGTTAATTATAAGCCTTCATGGGGTTGTTGGTAACAGATGGGCTCACATTGCAAGCCACTTGCCTGGTAGAACGGACAATGAAATAAAAAACTATTGGAATTCATGGATCAAAAAGAAAATTAGAAAATCTTCTTCTAATTCTGCTCCTAATTTATCAACACTACCAAGTGTTGATCATCATCATCCTCAGCTCAATTACAGTTCCAATCAACTAGATAATTACTTTACCAACCAAGAAAATGTAACAACAAAAGAAACCTTATTTTCATCCACATGTCCTTTATTTATGTTTGACACAAGTTCACTACATGAAACAACAACAACATCAACAGACAACAATGTAATAAGACCAGAAGTACTCTTCCATCATGATACTGTGAGTTTGAGTTCTGACACATGGAACTTGAATCACCATGATCATCATCATCAAGTTCAGGCACTTCCTCCTCATCATCCAGCTGCAATAGCTTTTACAACAATTCATGATACTAGTAATTATAATCTTCCACCATTGATAGAGAATAATGTGGAAAACAACATGGTGCCAATTGATCAAGTGCAATCTTGTAATATGGATGAGTTGAATGAATGGGTGGAAACTCAACAACAATGTCCTAGCAGCTTTATTTTCAGCTGGGAGAGTGTTGAAGGACAAATTGGATCAGGTGAAGAAGAACAAGTACTAGTACCAAACTCAAATTCACTTTCTCCTTTTCCTTCTTCATTATTATGA 960 0.3708 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKSSSNSAPNLSTLPSVDHHHPQLNYSSNQLDNYFTNQENVTTKETLFSSTCPLFMFDTSSLHETTTTSTDNNVIRPEVLFHHDTVSLSSDTWNLNHHDHHHQVQALPPHHPAAIAFTTIHDTSNYNLPPLIENNVENNMVPIDQVQSCNMDELNEWVETQQQCPSSFIFSWESVEGQIGSGEEEQVLVPNSNSLSPFPSSLL* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0223 319 Gene3D - 68 135 - -
Mal6g0223 319 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mal6g0223 319 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Mal6g0223 319 PANTHER MYB TRANSCRIPTION FACTOR 1 301 - -
Mal6g0223 319 CDD SANT 69 112 IPR001005 -
Mal6g0223 319 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Mal6g0223 319 CDD SANT 17 61 IPR001005 -
Mal6g0223 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Mal6g0223 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Mal6g0223 319 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mal6g0223 319 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mal6g0223 319 Gene3D - 6 66 - -
Mal6g0223 319 SMART sant 66 114 IPR001005 -
Mal6g0223 319 SMART sant 13 63 IPR001005 -
Mal6g0223 319 PANTHER MYB DOMAIN PROTEIN 55 1 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0223 Mal-Chr6 3221734 3223408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0223 1 254 MYB Transcription Factor Family AT1G63910 53.846 5.22e-93 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal6g0223 Myb_DNA-binding 4.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0223 K09422 K02947 gmx:100803556 403.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g0223 6 3221734 3223408 Mal6g0223 6 3221734 3223408 ECH
Mal6g0223 6 3221734 3223408 Mal7g4971 7 118598172 118600309 PCT