Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0219 ATGTCTTCCGTTCCCATGTCTCCATCCTTCTCCGAAGGCAAGAAGAAGAATAAGAAACACAACACCAAACATGCTGAACCAGAAGAACCACAAACCCAACAAGAAGATTTCATGATCAAACCTGAAAAACTAACACCAACAATCGACACCTCAAACTGGCCCATACTCTTGAAAAACTACGACCGTCTCAATGTCCGTACCGGTCACTACACCCCCCTTCCCGCCGGTCACTCACCTCTCAAAAGACCCATTGAGGAATATCTCAAATATGGTGTTATCAATCTTGATAAGCCTGCTAATCCTTCTTCTCACGAGGTTGTTGCTTGGATCAAGCGAATTCTTCGTCGCGAGAAGACCGGTCATAGTGGTACTCTTGATCCTAAGGTTACTGGTAATTTGATTGTCTGTATTGACAGAGCAACCAGGCTGGTCAAGTCTCAACAAGGTGCTGGAAAAGAGTATGTTTGTATTGCTAGGCTTCATTCTGCTGTTCCTGATATTGCTAAGGTAGCTCGTGCTCTTGAAACTTTAACTGGTGCTGTTTTTCAAAGACCACCTTTGATTTCTGCTGTTAAAAGGCAACTTAGGATTAGAACTATTTATGAGAGTAAGATGCTTGAATATGATGCTGAGAAAAATTTACTTGTGTTTTGGATTTCGTGTGAGGCCGGTACTTATGTTAGGACTATGTGTGTTCATTTGGGTTTAGTTCTCGGTGTCGGTGCTCATATGCAAGAGCTTAGGAGGGTTAGGTCTGGAATTATGGGTGAGAAGGATAATATGGTTACTATGCATGATGTTATGGATGCTCAGCATGTTTTTGATACAAAGGAGAAGAACAATGAGGCTTATTTGAGGAGGGTTGTTATGCCTTTGGAGGTTCTTTTGACTAGTTATAAGAGGTTGGTTGTTAAGGATTCAGCTGTCAATGCTATTTGTTATGGTGCCAAGTTGATGATTCCGGGGTTGCTTAGGTTTGAGAATGATATTGAAACTGGTGAGGAGGTTGTGCTTATGACTACTAAGGGTGAAGCTATTGCCCTTGGTATTGCTGAGATGACTACTGCTGTTATGGCTACTTGTGATCATGGTGTTGTTGCTAAGATTAAGAGGGTGGTTATGGATCGGGATACTTATCCTAGGAAATGGGGTTTGGGTCCTAGGGCTTCTATGAAGAAGAAGCTGATTGCTGCTGGGAAGCTGGATAAGCATGGGAAGCCGAATGAGAGTACTCCTCAAGAGTGGATGAGGAACGTTGTTTTGCCTACTGGTGGGGACAGTGTGATTGCGAGTATGGCTGCTGCTACTGAAGATGGGAAGAAAGAGGTTGCTGATGAAGAGGGTGGGAAGGTTAAGAAGGATGAAGATGGTGAAGGGCGTAAGAGAAAGAAACAGGAAACTGCCGATAGCCCTGCTCCTGCTAAGAAGACCAAGAAAGTAGATGAAGCGGCTGTGGAGGTTGAAGATGAGAAGAAAGAAAAGAAGAAGAAAAAGAAGAAGGATAAAGAGAATGGAAATGCTGCATCTTCTGATGAGGAGAAGGTTGAAAAGGAGAAGAAGAAAAAGAAGGACAAGGAAAAGGGTGAAGATGGTTCTCCTCAAGTCGACAAGTCTGAGAAGAAGAAAAAGAAGCACAAGGAACAGAGTGAAGTAGGTTCGCCTGAAGTGGACAAGTCTGAGAAGAAGAAAAAGAAGAAAGACAAAGAAGCCAAAGATAATGCTGCAGAGATCAGTAACGGAAAGGATGAGAGCAATGCTGATAGAAGTGAAAAGAAGCACAAGAAAAAGAAAAACAAAGACGCCCAAGAAGAATAG 1815 0.4287 MSSVPMSPSFSEGKKKNKKHNTKHAEPEEPQTQQEDFMIKPEKLTPTIDTSNWPILLKNYDRLNVRTGHYTPLPAGHSPLKRPIEEYLKYGVINLDKPANPSSHEVVAWIKRILRREKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDIAKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKMLEYDAEKNLLVFWISCEAGTYVRTMCVHLGLVLGVGAHMQELRRVRSGIMGEKDNMVTMHDVMDAQHVFDTKEKNNEAYLRRVVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIETGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIAAGKLDKHGKPNESTPQEWMRNVVLPTGGDSVIASMAAATEDGKKEVADEEGGKVKKDEDGEGRKRKKQETADSPAPAKKTKKVDEAAVEVEDEKKEKKKKKKKDKENGNAASSDEEKVEKEKKKKKDKEKGEDGSPQVDKSEKKKKKHKEQSEVGSPEVDKSEKKKKKKDKEAKDNAAEISNGKDESNADRSEKKHKKKKNKDAQEE* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0219 604 MobiDBLite consensus disorder prediction 1 35 - -
Mal6g0219 604 Pfam PUA domain 300 372 IPR002478 GO:0003723
Mal6g0219 604 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 4 14 547 - -
Mal6g0219 604 MobiDBLite consensus disorder prediction 435 604 - -
Mal6g0219 604 MobiDBLite consensus disorder prediction 438 604 - -
Mal6g0219 604 Gene3D Pseudouridine synthase 83 291 - -
Mal6g0219 604 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 14 547 IPR004802 GO:0006396
Mal6g0219 604 SUPERFAMILY Pseudouridine synthase 50 297 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Mal6g0219 604 Coils Coil 480 504 - -
Mal6g0219 604 Pfam DKCLD (NUC011) domain 50 107 IPR012960 -
Mal6g0219 604 Pfam tRNA pseudouridylate synthase B C-terminal domain 228 296 IPR032819 -
Mal6g0219 604 SUPERFAMILY PUA domain-like 299 380 IPR015947 -
Mal6g0219 604 TIGRFAM CBF5: putative rRNA pseudouridine synthase 57 384 IPR004802 GO:0006396
Mal6g0219 604 Gene3D PUA domain 50 383 IPR036974 GO:0003723
Mal6g0219 604 SMART DKCLD_2 49 107 IPR012960 -
Mal6g0219 604 CDD PseudoU_synth_hDyskerin 89 271 - -
Mal6g0219 604 ProSiteProfiles PUA domain profile. 299 374 - -
Mal6g0219 604 SMART pua_5 300 374 IPR002478 GO:0003723
Mal6g0219 604 TIGRFAM unchar_dom_2: uncharacterized domain 2 295 371 IPR004521 GO:0003723
Mal6g0219 604 Pfam TruB family pseudouridylate synthase (N terminal domain) 111 227 IPR002501 GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0219 Mal-Chr6 3177794 3179608 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0219 36 478 NAC Transcription Factor Family AT3G57150 82.619 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0219 K11131 - gmx:100806355 785.408