Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0213 ATGGGGTTTCCTACAGATGTTGTGTTGCCAAAGGTGTTTGTGCAACTCCTTTCCTTACTGTCTTTCATCAAAAAACTTGTTACCATCTTCTTCTTTTATTTCGGTATTGATTCCGGCTTCGCCTTTCCGGAGAATATGCCTGAATTTCAATCAGTAAACCCCCTGCTGCTTATCAGAGAAATCATGCCGGTGGTGAAGTTCTCGGAGCTGGAACTGGCGGTGGAGAGTTGCGCTGTCTGCATCTGCGAGTTCAAGGCGGAGGATGAGATCCAACGGCTCACATACTGCCGCCACATCTTCCACAGATGTTGCCTGGACCGTTGGATGGGATACGATCACACAACATGTCCTTTGTGTCGCACAACTTTCCTACCTCATCACATGCAAGATGCATAA 396 0.4747 MGFPTDVVLPKVFVQLLSLLSFIKKLVTIFFFYFGIDSGFAFPENMPEFQSVNPLLLIREIMPVVKFSELELAVESCAVCICEFKAEDEIQRLTYCRHIFHRCCLDRWMGYDHTTCPLCRTTFLPHHMQDA* 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0213 131 ProSiteProfiles Zinc finger RING-type profile. 77 120 IPR001841 -
Mal6g0213 131 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 125 IPR013083 -
Mal6g0213 131 PANTHER BRH1 RING FINGER PROTEIN 5 130 - -
Mal6g0213 131 Pfam Ring finger domain 76 120 IPR001841 -
Mal6g0213 131 PANTHER RING ZINC FINGER PROTEIN-RELATED 5 130 - -
Mal6g0213 131 SUPERFAMILY RING/U-box 62 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0213 Mal-Chr6 3035166 3035561 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0213 1 129 C3H Transcription Factor Family AT1G63840 45.070 1.39e-36 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0213 K16281 - gmx:102665617 175.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g0213 6 3035166 3035561 Mal6g0213 6 3035166 3035561 ECH
Mal6g0213 6 3035166 3035561 Mal7g4959 7 118419851 118420336 PCT